CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032991_P001	Maize	cytosol	96.11	96.11
Os10t0409900-01	Rice	plastid	92.22	91.18
TraesCS1B01G154600.1	Wheat	plastid	90.16	89.95
TraesCS1D01G136700.1	Wheat	nucleus	90.39	84.58
HORVU1Hr1G035200.1	Barley	plasma membrane	89.7	82.53
EER95442	Sorghum	mitochondrion	77.12	76.94
GSMUA_Achr7P27010_001	Banana	cytosol	71.4	75.0
GSMUA_Achr3P29560_001	Banana	cytosol	69.57	73.97
VIT_06s0004g00860.t01	Wine grape	cytosol	72.54	72.54
PGSC0003DMT400081852	Potato	cytosol	72.31	72.31
Solyc01g005970.2.1	Tomato	cytosol	72.08	72.08
PGSC0003DMT400034149	Potato	cytosol	71.17	71.17
Solyc01g022740.2.1	Tomato	cytosol	70.94	70.94
KRH58897	Soybean	cytosol	70.02	70.02
KRH42810	Soybean	cytosol	70.02	70.02
AT1G55270.1	Thale cress	mitochondrion	69.34	69.82
Bra011908.1-P	Field mustard	mitochondrion	69.34	69.66
CDY08233	Canola	mitochondrion	69.34	69.66
CDY26117	Canola	cytosol	69.34	69.66
CDY02451	Canola	cytosol	68.88	69.2
CDY10574	Canola	cytosol	68.88	69.2
Bra030872.1-P	Field mustard	cytosol	68.65	68.97
CDY33062	Canola	mitochondrion, plastid	66.13	66.44
CDY24045	Canola	mitochondrion	65.9	66.21
Bra037989.1-P	Field mustard	cytosol, plastid	65.68	65.98
KRH11716	Soybean	cytosol, golgi, plastid	50.8	59.68
KRH36711	Soybean	cytosol	48.74	52.85
KXG29748	Sorghum	plastid	51.49	51.72
GSMUA_Achr4P03630_001	Banana	plasma membrane	63.62	32.74
EER97991	Sorghum	mitochondrion	26.09	27.54
EES06149	Sorghum	cytosol	20.14	25.43
KXG24326	Sorghum	cytosol	27.23	25.43
EES06854	Sorghum	cytosol	21.97	25.07
OQU81371	Sorghum	mitochondrion	21.05	24.4
EES05304	Sorghum	cytosol, peroxisome, plastid	25.17	23.97
OQU82118	Sorghum	cytosol	18.54	23.28
EER90147	Sorghum	cytosol	20.82	23.16
KXG40080	Sorghum	cytosol	21.51	21.96
KXG27134	Sorghum	cytosol	13.5	21.93
OQU91835	Sorghum	cytosol, nucleus, plastid	21.97	21.62
KXG30756	Sorghum	cytosol	19.91	20.47
OQU83795	Sorghum	cytosol	20.59	20.18
OQU82347	Sorghum	mitochondrion	21.05	19.49

Protein Annotations

Gene3D:2.120.10.80	EntrezGene:8062265	MapMan:9.2.1.1.3	UniProt:C5WM65	EnsemblPlants:EER91632	ProteinID:EER91632
ProteinID:EER91632.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031463	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646
PFAM:PF01344	PANTHER:PTHR24412	PANTHER:PTHR24412:SF234	SMART:SM00612	EnsemblPlantsGene:SORBI_3001G251800	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI0001A82051	RefSeq:XP_002464634.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:27198866..27202614

Molecular Weight (calculated)

49640.9 Da

IEP (calculated)

9.937

GRAVY (calculated)

-0.365

Length

437 amino acids

Sequence
(BLAST)

001: MDAASRPPPP HGAGVRVRAP LVESVSCYCR LDTGLKTVVD ARKFVPGAKM CMQPEVKQNK RKSRGSRKER SKTQAPLLPG LPDDLAIACL IRVPRVEHPN
101: LRMVCRRWNR LLSGNYFYSL RKKIGVAEEW VYVFKRDREG KISWHAFDPL HQLWKSLPPV PHEYSEALGF GCAVLSGCYL YLFGGKDPLR GSMRRVVFYN
201: ARTNKWHRAP DMMRKRHFFG SCVINNCLYV AGGECEGIQR TLQSAEVYDP NRNRWACITE MNNGMVPFIG VVYDGKWFLK GLDSHRQVTS EVYLPSSNTW
301: SVIDDEMVTG WRNPSISFNG RLYSADCRDG CKLRVYDENT GTWTRFMDSK HHLGSSRAFE AAALVSLNGK LCVIRNNMSI TLVDVSDPTM SVETSSARMW
401: ETVARKGQHR SFVANLWSSI AGRNLKSHII HCQVLQV

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.