Factsheet for VIT_06s0004g00860.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005970.2.1	Tomato	cytosol	90.16	90.16
PGSC0003DMT400081852	Potato	cytosol	90.16	90.16
PGSC0003DMT400034149	Potato	cytosol	86.5	86.5
KRH42810	Soybean	cytosol	86.04	86.04
KRH58897	Soybean	cytosol	85.81	85.81
Solyc01g022740.2.1	Tomato	cytosol	85.58	85.58
AT1G55270.1	Thale cress	mitochondrion	80.78	81.34
Bra011908.1-P	Field mustard	mitochondrion	80.32	80.69
CDY26117	Canola	cytosol	80.32	80.69
CDY08233	Canola	mitochondrion	79.86	80.23
CDY02451	Canola	cytosol	79.41	79.77
Bra030872.1-P	Field mustard	cytosol	79.18	79.54
CDY10574	Canola	cytosol	79.18	79.54
VIT_11s0016g05050.t01	Wine grape	cytosol	77.57	79.21
CDY33062	Canola	mitochondrion, plastid	73.68	74.02
CDY24045	Canola	mitochondrion	73.68	74.02
GSMUA_Achr3P29560_001	Banana	cytosol	69.57	73.97
GSMUA_Achr7P27010_001	Banana	cytosol	70.25	73.8
Bra037989.1-P	Field mustard	cytosol, plastid	73.23	73.56
EER91632	Sorghum	plastid	72.54	72.54
Os10t0409900-01	Rice	plastid	72.54	71.72
Zm00001d032991_P001	Maize	cytosol	71.4	71.4
TraesCS1B01G154600.1	Wheat	plastid	71.4	71.23
KRH11716	Soybean	cytosol, golgi, plastid	59.95	70.43
Os03t0167800-02	Rice	cytosol	70.48	70.32
TraesCS4D01G282200.1	Wheat	cytosol	66.36	69.54
TraesCS3B01G611700.1	Wheat	cytosol	66.82	68.38
TraesCS3D01G540000.1	Wheat	cytosol	66.82	68.38
TraesCS4A01G020200.1	Wheat	cytosol	67.28	68.37
TraesCS4B01G283400.1	Wheat	cytosol	66.59	67.67
EER95442	Sorghum	mitochondrion	67.51	67.35
HORVU4Hr1G074720.7	Barley	plasma membrane	67.28	66.97
TraesCS4B01G283500.1	Wheat	cytosol	65.9	66.82
TraesCS1D01G136700.1	Wheat	nucleus	70.94	66.38
TraesCS3A01G534600.1	Wheat	cytosol	65.45	66.36
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	66.59	66.29
HORVU1Hr1G035200.1	Barley	plasma membrane	70.48	64.84
KRH36711	Soybean	cytosol	58.81	63.77
HORVU3Hr1G116690.2	Barley	mitochondrion	67.05	60.16
GSMUA_Achr4P03630_001	Banana	plasma membrane	63.16	32.51
VIT_15s0046g02790.t01	Wine grape	cytosol	17.62	27.9
VIT_01s0010g03320.t01	Wine grape	cytosol	22.88	25.97
VIT_15s0046g02710.t01	Wine grape	cytosol	21.28	25.91
VIT_18s0001g04730.t01	Wine grape	cytosol, plastid	27.69	25.37
VIT_04s0008g02380.t01	Wine grape	cytosol, peroxisome, plastid	21.05	24.86
VIT_06s0004g02980.t01	Wine grape	cytosol	20.37	24.45
VIT_16s0039g01470.t01	Wine grape	cytosol	21.28	24.22
VIT_07s0151g00770.t01	Wine grape	cytosol	18.99	24.06
VIT_12s0055g00910.t01	Wine grape	cytosol	26.09	23.8
VIT_10s0003g03730.t01	Wine grape	cytosol	12.13	23.04
VIT_17s0000g05920.t01	Wine grape	cytosol	20.59	20.32
VIT_14s0068g02150.t01	Wine grape	cytosol	19.68	18.03
VIT_01s0026g02080.t01	Wine grape	nucleus	20.37	16.45

Protein Annotations

EntrezGene:100255323	wikigene:100255323	Gene3D:2.120.10.80	MapMan:9.2.1.1.3	UniProt:A5C9A3	EMBL:AM486772
ProteinID:CAN64353	ProteinID:CAN64353.1	ProteinID:CCB43789	ProteinID:CCB43789.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031463	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	EntrezGene:LOC100255323	wikigene:LOC100255323	PFAM:PF00646
PFAM:PF01344	PANTHER:PTHR24412	PANTHER:PTHR24412:SF234	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI0001522C0D	ArrayExpress:VIT_06s0004g00860	EnsemblPlantsGene:VIT_06s0004g00860	EnsemblPlants:VIT_06s0004g00860.t01	RefSeq:XP_002283484	RefSeq:XP_002283484.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:980036..984320

Molecular Weight (calculated)

49588.8 Da

IEP (calculated)

9.900

GRAVY (calculated)

-0.320

Length

437 amino acids

Sequence
(BLAST)

001: MDQRVEQSPN AQRGFRVQAP LVDSVSCYCK VDSGLKTVAG ARKFVPGSKL CIQPDINPHA HKSKNSRRER TRFQPPLLPG LPDDLAIACL IRVPRVEHRK
101: LRLVCKRWHR LLSGNFFYSL RKSLGMAEEW VYVIKRDRDG RISWHAFDPT YQLWQPLPPV PVEYSEALGF GCAVLSGCNL YLFGGKDPMK RSLRRVIFYS
201: ARTNKWHRAP DMLRKRHFFG SCVINNCLYV AGGECEGIQR TLRSAEVYDP NRNRWSFISD MSTAMVPFIG VIYNGKWFLK GLGSHREVMS EAYIPETNTW
301: TPISDGMVAG WRNPSISLNG QLYALDCRDG CKLRVYDSDT DSWNKFIDSK LHLGSSRALE AAALVPLNGK LCIIRNNMSI SIVDVSSPDK HVESNPHLWE
401: NIAGKGHFRT LVTNLWSSIA GRNSLRSHIV HCQVLQA

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.