Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G282200.1 | Wheat | cytosol | 94.2 | 97.36 |
| TraesCS4B01G283400.1 | Wheat | cytosol | 96.06 | 96.28 |
| TraesCS4A01G020200.1 | Wheat | cytosol | 93.97 | 94.19 |
| HORVU4Hr1G074720.7 | Barley | plasma membrane | 93.04 | 91.34 |
| TraesCS3B01G611700.1 | Wheat | cytosol | 86.54 | 87.35 |
| Os03t0167800-02 | Rice | cytosol | 80.51 | 79.22 |
| EER95442 | Sorghum | mitochondrion | 78.19 | 76.94 |
| TraesCS1B01G154600.1 | Wheat | plastid | 77.73 | 76.48 |
| Zm00001d027827_P001 | Maize | cytosol, mitochondrion, nucleus | 77.03 | 75.63 |
| GSMUA_Achr7P27010_001 | Banana | cytosol | 67.05 | 69.47 |
| GSMUA_Achr3P29560_001 | Banana | cytosol | 65.43 | 68.61 |
| PGSC0003DMT400081852 | Potato | cytosol | 67.29 | 66.36 |
| Solyc01g005970.2.1 | Tomato | cytosol | 67.05 | 66.13 |
| PGSC0003DMT400034149 | Potato | cytosol | 66.82 | 65.9 |
| VIT_06s0004g00860.t01 | Wine grape | cytosol | 66.82 | 65.9 |
| Solyc01g022740.2.1 | Tomato | cytosol | 66.59 | 65.68 |
| AT1G55270.1 | Thale cress | mitochondrion | 65.66 | 65.21 |
| CDY08233 | Canola | mitochondrion | 65.43 | 64.83 |
| Bra011908.1-P | Field mustard | mitochondrion | 64.97 | 64.37 |
| CDY26117 | Canola | cytosol | 64.97 | 64.37 |
| KRH42810 | Soybean | cytosol | 65.2 | 64.3 |
| KRH58897 | Soybean | cytosol | 65.2 | 64.3 |
| CDY02451 | Canola | cytosol | 64.27 | 63.68 |
| CDY10574 | Canola | cytosol | 64.27 | 63.68 |
| Bra030872.1-P | Field mustard | cytosol | 64.04 | 63.45 |
| CDY33062 | Canola | mitochondrion, plastid | 61.72 | 61.15 |
| CDY24045 | Canola | mitochondrion | 61.48 | 60.92 |
| Bra037989.1-P | Field mustard | cytosol, plastid | 60.79 | 60.23 |
| KRH11716 | Soybean | cytosol, golgi, plastid | 48.03 | 55.65 |
| KRH36711 | Soybean | cytosol | 46.87 | 50.12 |
| TraesCS6B01G209700.1 | Wheat | cytosol | 46.64 | 47.52 |
| GSMUA_Achr4P03630_001 | Banana | plasma membrane | 59.63 | 30.27 |
| TraesCS7B01G234000.1 | Wheat | cytosol | 18.79 | 24.4 |
| TraesCS6B01G052900.2 | Wheat | cytosol | 21.58 | 24.35 |
| TraesCS3B01G481500.1 | Wheat | cytosol, plastid | 21.35 | 23.96 |
| TraesCS2B01G298300.1 | Wheat | mitochondrion | 20.88 | 23.5 |
| TraesCS6B01G243200.1 | Wheat | cytosol | 18.79 | 22.95 |
| TraesCS6B01G227500.1 | Wheat | cytosol, peroxisome, plastid | 23.67 | 22.17 |
| TraesCS2B01G484200.1 | Wheat | cytosol | 22.27 | 21.38 |
| TraesCS6B01G334300.1 | Wheat | cytosol, nucleus, plastid | 19.26 | 19.53 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G283500.1 | EnsemblPlantsGene:TraesCS4B01G283500 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 |
| PANTHER:PTHR24412 | PANTHER:PTHR24412:SF234 | PFAM:PF00646 | PFAM:PF01344 | SEG:seg | SMART:SM00256 |
| SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | MapMan:9.2.1.1.3 | : | : |
Description
No Description!
Coordinates
chr4B:+:566981446..566983051
Molecular Weight (calculated)
49415.0 Da
IEP (calculated)
10.107
GRAVY (calculated)
-0.272
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MRFFFVDGNI RDLSSPNAVS CYCRVDGGLK TVVNARKFVP GARLCMQPDV KPNKRKSRTS RKERCRTQAP LLPGLPDDLA ISCLMRVPRV EHPNLRLVCK
101: RWSRLLSGNY YYTLRKKFGM AEEWVYVFKR DRDQKISWHA FDPVHQLWKS LPPVPPEYSE AVGFGCAVLS GCYLYLFGGK GSVRGSMRRV VFYNTRTNKW
201: HRAPDMLRKR HFFGSCVITN CLYVAGGECE GIQRTLRSAE VYNPNRNRWS CITEMSIGMV PFIGVVYDGK WFLKGFDSHR QIVSEVYLPT SNMWSTTGNE
301: LVAGLRNPSI SFNGRLYSVD CRDACKLRVY DGDKGLWTRF MDSRRHLGSS RSFEAVALVS LDGKICVIRN NMGITLVDVC DPTTVIEIDS ARMWETFARK
401: GQHRSFMANL WSTIVGRHLK THIIHCQVLQ V
101: RWSRLLSGNY YYTLRKKFGM AEEWVYVFKR DRDQKISWHA FDPVHQLWKS LPPVPPEYSE AVGFGCAVLS GCYLYLFGGK GSVRGSMRRV VFYNTRTNKW
201: HRAPDMLRKR HFFGSCVITN CLYVAGGECE GIQRTLRSAE VYNPNRNRWS CITEMSIGMV PFIGVVYDGK WFLKGFDSHR QIVSEVYLPT SNMWSTTGNE
301: LVAGLRNPSI SFNGRLYSVD CRDACKLRVY DGDKGLWTRF MDSRRHLGSS RSFEAVALVS LDGKICVIRN NMGITLVDVC DPTTVIEIDS ARMWETFARK
401: GQHRSFMANL WSTIVGRHLK THIIHCQVLQ V
001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA
Arabidopsis Description
F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.