Factsheet for TraesCS6B01G227500.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, peroxisome, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G052010.1	Barley	cytosol	94.78	94.78
Os02t0574900-01	Rice	cytosol	81.96	81.96
EES05304	Sorghum	cytosol, peroxisome, plastid	77.83	78.0
Zm00001d050862_P001	Maize	cytosol, peroxisome, plastid	75.0	75.66
GSMUA_Achr6P04050_001	Banana	cytosol	60.43	61.1
VIT_18s0001g04730.t01	Wine grape	cytosol, plastid	61.09	58.91
VIT_12s0055g00910.t01	Wine grape	cytosol	59.57	57.2
KRH58301	Soybean	cytosol	58.04	55.51
Solyc01g104980.2.1	Tomato	cytosol, plastid	57.17	55.37
PGSC0003DMT400032733	Potato	cytosol, plastid	56.96	55.16
KRH42190	Soybean	cytosol, plastid	57.39	54.89
CDY00415	Canola	mitochondrion	25.43	54.67
KRH18847	Soybean	cytosol	56.09	54.32
KRH72270	Soybean	cytosol	15.43	54.2
KRH16647	Soybean	cytosol, plastid	56.09	54.09
KRH53131	Soybean	cytosol	55.65	53.78
GSMUA_Achr10P...	Banana	cytosol	60.43	53.46
AT1G22040.1	Thale cress	plastid	54.78	53.05
KRH62415	Soybean	cytosol	31.74	52.9
CDY01300	Canola	cytosol	25.43	52.23
Bra012304.1-P	Field mustard	cytosol	48.48	47.75
CDY04697	Canola	cytosol	23.04	47.53
CDY30645	Canola	nucleus	23.04	47.53
CDY01301	Canola	cytosol	15.87	46.5
Bra031360.1-P	Field mustard	plastid	23.48	44.26
KRH55297	Soybean	cytosol	26.74	41.98
TraesCS7B01G234000.1	Wheat	cytosol	18.48	25.6
TraesCS6B01G243200.1	Wheat	cytosol	18.91	24.65
TraesCS1B01G154600.1	Wheat	plastid	22.83	23.97
TraesCS4B01G283400.1	Wheat	cytosol	22.39	23.95
TraesCS4B01G283500.1	Wheat	cytosol	22.17	23.67
TraesCS3B01G481500.1	Wheat	cytosol, plastid	19.57	23.44
TraesCS3B01G611700.1	Wheat	cytosol	21.74	23.42
TraesCS6B01G209700.1	Wheat	cytosol	21.3	23.17
TraesCS6B01G052900.2	Wheat	cytosol	18.91	22.77
TraesCS2B01G298300.1	Wheat	mitochondrion	18.04	21.67
TraesCS6B01G334300.1	Wheat	cytosol, nucleus, plastid	18.04	19.53
TraesCS2B01G484200.1	Wheat	cytosol	18.26	18.71

Protein Annotations

EnsemblPlants:TraesCS6B01G227500.1	EnsemblPlantsGene:TraesCS6B01G227500	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
PANTHER:PTHR24414	PANTHER:PTHR24414:SF45	PFAM:PF00646	PFAM:PF01344	PFscan:PS50181	SMART:SM00256
SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6B:-:352413605..352414987

Molecular Weight (calculated)

51294.4 Da

IEP (calculated)

5.743

GRAVY (calculated)

-0.121

Length

460 amino acids

Sequence
(BLAST)

001: MGSYLSTAVS KARSMDSDEV HGSVSNKRAK ITPYDCGSYS RIIPTLPDEL SFQILARLPR IHYLKMKLVS QTWKAAITGA ELAQLRKELG LTEEWLYILT
101: RVEANKLECY ALDPLFQKWQ RLPSMPSFAN EADSTGRTQY SVFRMWNVVG SSIRIADFFR GWFWRRYGLD QMPFCGCSVG VADGCLYVLG GFSKAVALNC
201: VWRYDPCVNL WQEVNPMISG RAFSKASLLE SKLYVVGGVS RGRNGLLPLR SGEVFDPKTG LWSELPEMPF VKAQVLPTAF LADVLKPIAT GMASYNGKLY
301: VPQSLYSWPF FFDIGGEIYD SELNSWSTMP DGLGDGWPAR QAGTKLGVVV NDELYTLEPS SSLDSGQIKR YDAEEDVWRT MVPHVPVHDF TDAESPYLLA
401: GLHGKLHVIT KEANNNLQVM QAVLENNTGN DAPEENVLWN IVASKNFGAA ELISCQVLNV

Best Arabidopsis Sequence Match ( AT1G22040.1 )
(BLAST)

001: MGSVMSLSCS KRKATSQDVE CSSESRKRRK ISSENDEEEC CRLIPSLPDE LSIQILARLP RICYSSVRLV SRRWRSAVST SEVYSLRKEL GRTEEWLYVL
101: TKGHEDKLLW YALDPVSTKW QRLPPMPVVV YEEESRKSLS GLWNMITPSF NVGAIVRSFL GRRDSSEQMP FCGCAIGAVD GGLYVIGGLS RSKTVSCVWR
201: FDPILNSWSE VSSMLASRAY SKTGVLNKKL YVVGGVDRGR GGLSPLQSAE VYDPSTDAWS EVPSMPFSKA QVLPNAFLAD LLKPIATGMT CYNGRLCVPQ
301: SLYSWPFFVD VGGEVYDPET NLWVEMPSGM GEGWPARQAG TKLSVVVDGE LYAFDPSSSM ENGKIKVYDQ KEDTWKVVIG EVPVYDLTDS ESPYLLAGFH
401: GKLHFITRDP NHNVTVLRAD VPNIPVSSSS SSSSSVSIPH LKTNAPNKSD TVTWKLIATK DFGAAELVSC QVIDI

Arabidopsis Description

F-box/kelch-repeat protein At1g22040 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.