Factsheet for GSMUA_Achr6P04050_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	75.16	65.77
VIT_18s0001g04730.t01	Wine grape	cytosol, plastid	67.47	64.36
Os02t0574900-01	Rice	cytosol	61.54	60.87
EES05304	Sorghum	cytosol, peroxisome, plastid	61.32	60.78
TraesCS6B01G227500.1	Wheat	cytosol, peroxisome, plastid	61.1	60.43
Zm00001d050862_P001	Maize	cytosol, peroxisome, plastid	60.22	60.09
VIT_12s0055g00910.t01	Wine grape	cytosol	62.86	59.71
HORVU6Hr1G052010.1	Barley	cytosol	60.0	59.35
PGSC0003DMT400032733	Potato	cytosol, plastid	61.76	59.16
Solyc01g104980.2.1	Tomato	cytosol, plastid	61.32	58.74
KRH53131	Soybean	cytosol	61.1	58.4
AT1G22040.1	Thale cress	plastid	60.88	58.32
KRH42190	Soybean	cytosol, plastid	60.66	57.38
KRH58301	Soybean	cytosol	60.44	57.17
KRH18847	Soybean	cytosol	59.56	57.05
KRH62415	Soybean	cytosol	34.51	56.88
KRH16647	Soybean	cytosol, plastid	59.12	56.39
CDY01300	Canola	cytosol	27.25	55.36
CDY00415	Canola	mitochondrion	25.93	55.14
Bra012304.1-P	Field mustard	cytosol	54.95	53.53
KRH72270	Soybean	cytosol	14.95	51.91
CDY30645	Canola	nucleus	25.05	51.12
CDY04697	Canola	cytosol	24.84	50.67
CDY01301	Canola	cytosol	17.14	49.68
Bra031360.1-P	Field mustard	plastid	25.27	47.13
GSMUA_Achr2P22090_001	Banana	cytosol	38.02	45.89
KRH55297	Soybean	cytosol	28.35	44.03
GSMUA_Achr6P24370_001	Banana	cytosol	21.98	28.82
GSMUA_Achr3P29560_001	Banana	cytosol	23.74	26.28
GSMUA_Achr3P16120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	21.76	25.92
GSMUA_AchrUn_...	Banana	cytosol	20.22	25.77
GSMUA_Achr7P08330_001	Banana	cytosol	21.98	25.38
GSMUA_Achr6P31190_001	Banana	mitochondrion	22.42	24.82
GSMUA_Achr7P27010_001	Banana	cytosol	22.64	24.76
GSMUA_Achr2P17100_001	Banana	cytosol, plastid	21.76	24.26
GSMUA_Achr4P20790_001	Banana	extracellular	19.78	23.87
GSMUA_Achr8P28270_001	Banana	cytosol	19.78	23.44
GSMUA_Achr8P01380_001	Banana	cytosol	19.56	23.42
GSMUA_Achr6P20750_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	19.34	22.56
GSMUA_Achr1P21630_001	Banana	cytosol	18.02	21.75
GSMUA_Achr4P09990_001	Banana	cytosol	20.22	21.45
GSMUA_Achr3P23350_001	Banana	cytosol, extracellular	18.68	21.09
GSMUA_Achr9P30470_001	Banana	cytosol	17.58	20.46
GSMUA_Achr7P20970_001	Banana	cytosol	17.58	20.25
GSMUA_Achr4P00520_001	Banana	cytosol	17.14	20.05
GSMUA_Achr10P...	Banana	nucleus	19.12	20.0
GSMUA_Achr2P18470_001	Banana	cytosol	18.68	19.95
GSMUA_Achr8P17960_001	Banana	nucleus	18.24	19.95
GSMUA_Achr11P...	Banana	cytosol	18.24	18.86
GSMUA_Achr2P14920_001	Banana	mitochondrion	18.68	17.78
GSMUA_Achr3P01570_001	Banana	golgi	18.02	16.77
GSMUA_Achr4P24130_001	Banana	nucleus	18.68	16.44
GSMUA_Achr4P03630_001	Banana	plasma membrane	21.1	11.31

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr6G04050_001	EnsemblPlants:GSMUA_Achr6P04050_001	EnsemblPlants:GSMUA_Achr6T04050_001	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M0T403	PFAM:PF01344	PFAM:PF12937	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF45	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI000294FCB5	SEG:seg	:	:	:	:

Description

F-box/kelch-repeat protein At1g22040 [Source:GMGC_GENE;Acc:GSMUA_Achr6G04050_001]

Coordinates

chr6:-:2786178..2789677

Molecular Weight (calculated)

50916.6 Da

IEP (calculated)

6.847

GRAVY (calculated)

-0.083

Length

455 amino acids

Sequence
(BLAST)

001: MGSFLSVPAA KSGEGVHCET SRGDANKKIR ISSYFDDNPR LIPSLPDEVS IQILARLPRI HYLNVKLVSR RWMIAVMSGE LFQLRRQLGV TEEWLYVMTK
101: TGGDKYLWQA LDPRSGKWQR LPPMPHVVDE EEPKRGLPGF WMWGVVGSSI KLADFIRGWL GRRDNLDQMP FCGCAVGVVN GCLYVLGGFS RASAINCVWR
201: YDPCLNLWQE VSSMTSARAF CKTGILNDKL YVVGGVVRGR NGLIPLRTAE VFDPLTSLWT ELPSMPFVKT QVLPTAFLAD MLKPIATGLV SYRGRLCVPQ
301: SLYSWPFFFD IGGEIYDPET SSWVEMPHGM GDGWPARQAG TKLGTVVNGD LYALDPASCL DNGKIKKYDN QEDVWRVVIE NVPVRYLTDS ESPFLLAGLL
401: GKLHVIMKDA NHHIVILEAD LQRRTGSNEE PEFWKVIDAK DSGVAELVSC QVLDI

Best Arabidopsis Sequence Match ( AT1G22040.1 )
(BLAST)

001: MGSVMSLSCS KRKATSQDVE CSSESRKRRK ISSENDEEEC CRLIPSLPDE LSIQILARLP RICYSSVRLV SRRWRSAVST SEVYSLRKEL GRTEEWLYVL
101: TKGHEDKLLW YALDPVSTKW QRLPPMPVVV YEEESRKSLS GLWNMITPSF NVGAIVRSFL GRRDSSEQMP FCGCAIGAVD GGLYVIGGLS RSKTVSCVWR
201: FDPILNSWSE VSSMLASRAY SKTGVLNKKL YVVGGVDRGR GGLSPLQSAE VYDPSTDAWS EVPSMPFSKA QVLPNAFLAD LLKPIATGMT CYNGRLCVPQ
301: SLYSWPFFVD VGGEVYDPET NLWVEMPSGM GEGWPARQAG TKLSVVVDGE LYAFDPSSSM ENGKIKVYDQ KEDTWKVVIG EVPVYDLTDS ESPYLLAGFH
401: GKLHFITRDP NHNVTVLRAD VPNIPVSSSS SSSSSVSIPH LKTNAPNKSD TVTWKLIATK DFGAAELVSC QVIDI

Arabidopsis Description

F-box/kelch-repeat protein At1g22040 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.