Factsheet for Zm00001d050862_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05304	Sorghum	cytosol, peroxisome, plastid	91.67	91.07
Os02t0574900-01	Rice	cytosol	76.97	76.3
TraesCS6B01G227500.1	Wheat	cytosol, peroxisome, plastid	75.66	75.0
HORVU6Hr1G052010.1	Barley	cytosol	74.56	73.91
GSMUA_Achr6P04050_001	Banana	cytosol	60.09	60.22
VIT_18s0001g04730.t01	Wine grape	cytosol, plastid	60.31	57.65
PGSC0003DMT400032733	Potato	cytosol, plastid	57.46	55.16
Solyc01g104980.2.1	Tomato	cytosol, plastid	57.24	54.95
VIT_12s0055g00910.t01	Wine grape	cytosol	57.68	54.91
KRH42190	Soybean	cytosol, plastid	57.24	54.26
KRH53131	Soybean	cytosol	56.36	53.99
KRH58301	Soybean	cytosol	56.36	53.43
AT1G22040.1	Thale cress	plastid	54.39	52.21
KRH18847	Soybean	cytosol	54.39	52.21
KRH16647	Soybean	cytosol, plastid	54.39	51.99
KRH72270	Soybean	cytosol	14.91	51.91
KRH62415	Soybean	cytosol	31.36	51.81
GSMUA_Achr10P...	Banana	cytosol	57.02	50.0
CDY00415	Canola	mitochondrion	23.25	49.53
CDY01301	Canola	cytosol	16.89	49.04
Zm00001d049632_P001	Maize	cytosol	50.66	48.23
CDY01300	Canola	cytosol	23.25	47.32
CDY04697	Canola	cytosol	23.03	47.09
Bra012304.1-P	Field mustard	cytosol	47.81	46.68
CDY30645	Canola	nucleus	22.81	46.64
Bra031360.1-P	Field mustard	plastid	23.25	43.44
KRH55297	Soybean	cytosol	25.66	39.93
Zm00001d015744_P001	Maize	plastid	24.78	27.03
Zm00001d014338_P001	Maize	cytosol	20.39	26.72
Zm00001d018813_P001	Maize	mitochondrion	23.68	26.34
Zm00001d032991_P001	Maize	cytosol	24.56	25.63
Zm00001d016553_P001	Maize	cytosol	20.39	25.55
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	24.12	25.06
Zm00001d046922_P001	Maize	cytosol	21.05	24.94
Zm00001d046921_P001	Maize	cytosol	21.05	24.37
Zm00001d014986_P001	Maize	cytosol	18.2	22.86
Zm00001d027856_P001	Maize	cytosol	19.52	20.75
Zm00001d052253_P001	Maize	cytosol	19.08	20.57
Zm00001d048310_P001	Maize	cytosol	19.08	20.33
Zm00001d048898_P001	Maize	cytosol	19.08	20.0
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	18.86	19.41
Zm00001d033012_P001	Maize	cytosol	18.86	19.28
Zm00001d007596_P001	Maize	nucleus, plastid	18.42	19.05
Zm00001d026321_P001	Maize	cytosol	17.98	18.3
Zm00001d002284_P003	Maize	mitochondrion	18.42	17.21
Zm00001d007538_P001	Maize	cytosol	8.77	13.47
Zm00001d019862_P001	Maize	cytosol	17.98	11.99

Protein Annotations

EntrezGene:100281539	Gene3D:2.120.10.80	MapMan:35.1	ProteinID:AQK53167.1	UniProt:B6SWC5	EMBL:EU957040
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF01344	PFAM:PF12937	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF45	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000182AED6
EnsemblPlantsGene:Zm00001d050862	EnsemblPlants:Zm00001d050862_P001	EnsemblPlants:Zm00001d050862_T001	SEG:seg	:	:

Description

F-box/kelch-repeat protein

Coordinates

chr4:+:127378539..127379909

Molecular Weight (calculated)

50685.7 Da

IEP (calculated)

7.362

GRAVY (calculated)

-0.099

Length

456 amino acids

Sequence
(BLAST)

001: MGSILSATST TAKSMDQHEA SGTDPNKRVK ISTYEYGSNP RIIPTLPDEL SLQILARSPR IHYLNLKLVC RAWKAAIIGY ELSQLRRELG VSEEWVYVLT
101: KAEAYKLHWY ALDPVFQKWQ RLPPMPSFVN QEESNRTASS AFWMWNVVGS SIRIADYVRG LFWRRNSLDQ MPFCGCSVGV ADGYLYVIGG FSKAVALNRV
201: CRYDPFLNLW QEVSPMMTGR AFCKAAFLNG KLYVVGGVSR GRNGLLPLRS AEAFDPKTGL WSDLPEMPFA RAQVLPTAFL VDVLKPIATG MAPYKGKLYV
301: PQSLYSWPFF FDIGGEIYDP DLNAWSTMPD GLGDGWPARQ AGTKLGVVID DRLYTLEPSS SLDSGKIKRY DSEEDAWVTI TPQVPVNDFT GAEAPYLLAG
401: LGGRLHVITK AANNTLQVMQ AVVQNNSVSE ENVVWTTVAS RNFGTAELVS CQVLDV

Best Arabidopsis Sequence Match ( AT1G22040.1 )
(BLAST)

001: MGSVMSLSCS KRKATSQDVE CSSESRKRRK ISSENDEEEC CRLIPSLPDE LSIQILARLP RICYSSVRLV SRRWRSAVST SEVYSLRKEL GRTEEWLYVL
101: TKGHEDKLLW YALDPVSTKW QRLPPMPVVV YEEESRKSLS GLWNMITPSF NVGAIVRSFL GRRDSSEQMP FCGCAIGAVD GGLYVIGGLS RSKTVSCVWR
201: FDPILNSWSE VSSMLASRAY SKTGVLNKKL YVVGGVDRGR GGLSPLQSAE VYDPSTDAWS EVPSMPFSKA QVLPNAFLAD LLKPIATGMT CYNGRLCVPQ
301: SLYSWPFFVD VGGEVYDPET NLWVEMPSGM GEGWPARQAG TKLSVVVDGE LYAFDPSSSM ENGKIKVYDQ KEDTWKVVIG EVPVYDLTDS ESPYLLAGFH
401: GKLHFITRDP NHNVTVLRAD VPNIPVSSSS SSSSSVSIPH LKTNAPNKSD TVTWKLIATK DFGAAELVSC QVIDI

Arabidopsis Description

F-box/kelch-repeat protein At1g22040 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.