Factsheet for Zm00001d049632_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24326	Sorghum	cytosol	77.87	79.7
Os10t0363600-01	Rice	cytosol, plastid	67.64	68.21
TraesCS4A01G472100.1	Wheat	cytosol	61.59	64.41
TraesCS7A01G020100.1	Wheat	cytosol, plastid	60.96	64.04
TraesCS7D01G016400.1	Wheat	cytosol, plastid	60.54	63.6
HORVU7Hr1G002140.2	Barley	mitochondrion	62.0	62.26
VIT_18s0001g04730.t01	Wine grape	cytosol, plastid	54.7	54.93
VIT_12s0055g00910.t01	Wine grape	cytosol	54.07	54.07
KRH53131	Soybean	cytosol	51.77	52.1
KRH18847	Soybean	cytosol	51.57	52.0
Solyc01g104980.2.1	Tomato	cytosol, plastid	51.36	51.79
KRH62415	Soybean	cytosol	29.44	51.09
KRH16647	Soybean	cytosol, plastid	50.52	50.73
Zm00001d050862_P001	Maize	cytosol, peroxisome, plastid	48.23	50.66
PGSC0003DMT400032733	Potato	cytosol, plastid	50.1	50.53
KRH42190	Soybean	cytosol, plastid	50.73	50.52
KRH58301	Soybean	cytosol	50.1	49.9
AT1G22040.1	Thale cress	plastid	48.85	49.26
KRH72270	Soybean	cytosol	13.36	48.85
CDY00415	Canola	mitochondrion	21.29	47.66
CDY01300	Canola	cytosol	21.92	46.88
Bra012304.1-P	Field mustard	cytosol	44.26	45.4
CDY01301	Canola	cytosol	14.4	43.95
CDY30645	Canola	nucleus	20.46	43.95
CDY04697	Canola	cytosol	20.25	43.5
GSMUA_Achr2P22090_001	Banana	cytosol	33.61	42.71
Bra031360.1-P	Field mustard	plastid	21.09	41.39
KRH55297	Soybean	cytosol	24.22	39.59
Zm00001d015744_P001	Maize	plastid	26.1	29.9
Zm00001d014338_P001	Maize	cytosol	20.67	28.45
Zm00001d032991_P001	Maize	cytosol	24.84	27.23
Zm00001d018813_P001	Maize	mitochondrion	22.96	26.83
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	24.22	26.42
Zm00001d046922_P001	Maize	cytosol	20.88	25.97
Zm00001d046921_P001	Maize	cytosol	21.09	25.63
Zm00001d014986_P001	Maize	cytosol	18.79	24.79
Zm00001d016553_P001	Maize	cytosol	18.79	24.73
Zm00001d048310_P001	Maize	cytosol	19.0	21.26
Zm00001d027856_P001	Maize	cytosol	18.79	20.98
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	19.0	20.54
Zm00001d048898_P001	Maize	cytosol	18.58	20.46
Zm00001d033012_P001	Maize	cytosol	19.0	20.4
Zm00001d007596_P001	Maize	nucleus, plastid	18.58	20.18
Zm00001d052253_P001	Maize	cytosol	17.33	19.62
Zm00001d026321_P001	Maize	cytosol	17.75	18.97
Zm00001d002284_P003	Maize	mitochondrion	17.75	17.42
Zm00001d007538_P001	Maize	cytosol	9.6	15.49
Zm00001d019862_P001	Maize	cytosol	17.33	12.13

Protein Annotations

EntrezGene:100193097	Gene3D:2.120.10.80	MapMan:35.1	ProteinID:AQK50951.1	UniProt:B4FDS3	EMBL:BT035261
EMBL:BT060977	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344
PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF45	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI00017B6593	EnsemblPlantsGene:Zm00001d049632	EnsemblPlants:Zm00001d049632_P001	EnsemblPlants:Zm00001d049632_T001	SEG:seg	:

Description

F-box/kelch-repeat protein

Coordinates

chr4:-:38171001..38172440

Molecular Weight (calculated)

50965.3 Da

IEP (calculated)

7.869

GRAVY (calculated)

-0.038

Length

479 amino acids

Sequence
(BLAST)

001: MGASLGSAAS KDRQQEHGGE APRPDPCKKT RLSSPLCTIH GSHGHPRLIP GLPDEVSLQI LARMPRMGYL KAKMVSRSWK AAVTGAELYR LRKELGVAEE
101: WLYILTKAAA GGQKLVWHAL DPVSNQWQRL PLMPGIECRS GGVYGLGLRD LVSVGVGIFD VIRGWLGQKE LSGGVPPFCG CAVGAAGGCL YVLGGFSGAS
201: ASKRVWRYDP SANSWREVSP MRAGRAFCKA SLLNDKLYVV GGVSKGENGL IAPLRSAEVF DPATGAWAEL PDMLFSKSQA MPTAIADLLK PVAAGVTSYG
301: GKLHVPQSFY SWPFAVDVGG EVFDPETNSW EQMPAGMGEG WPARQAGTRL SAVVEGDLYA LEPTTSSSGG CEIKMYDAQE DAWKVAVSQV RAGAFDESDS
401: PCLLAAFLGK LHLVVKDMGS RISVVQMDSL MKPVDSPALS AATTCRTPDV SSEQTHVWKA IASKNIAAAE LVSCQVLSI

Best Arabidopsis Sequence Match ( AT1G22040.1 )
(BLAST)

001: MGSVMSLSCS KRKATSQDVE CSSESRKRRK ISSENDEEEC CRLIPSLPDE LSIQILARLP RICYSSVRLV SRRWRSAVST SEVYSLRKEL GRTEEWLYVL
101: TKGHEDKLLW YALDPVSTKW QRLPPMPVVV YEEESRKSLS GLWNMITPSF NVGAIVRSFL GRRDSSEQMP FCGCAIGAVD GGLYVIGGLS RSKTVSCVWR
201: FDPILNSWSE VSSMLASRAY SKTGVLNKKL YVVGGVDRGR GGLSPLQSAE VYDPSTDAWS EVPSMPFSKA QVLPNAFLAD LLKPIATGMT CYNGRLCVPQ
301: SLYSWPFFVD VGGEVYDPET NLWVEMPSGM GEGWPARQAG TKLSVVVDGE LYAFDPSSSM ENGKIKVYDQ KEDTWKVVIG EVPVYDLTDS ESPYLLAGFH
401: GKLHFITRDP NHNVTVLRAD VPNIPVSSSS SSSSSVSIPH LKTNAPNKSD TVTWKLIATK DFGAAELVSC QVIDI

Arabidopsis Description

F-box/kelch-repeat protein At1g22040 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.