Factsheet for Zm00001d015744_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29748	Sorghum	plastid	91.63	88.05
TraesCS6D01G167900.1	Wheat	plastid	74.4	73.52
Os02t0202900-00	Rice	cytosol	76.56	73.39
TraesCS6A01G175700.1	Wheat	plastid	73.92	73.05
HORVU6Hr1G037850.2	Barley	plastid	74.4	73.0
TraesCS6B01G209700.1	Wheat	cytosol	71.77	70.92
GSMUA_Achr7P08330_001	Banana	cytosol	53.83	57.11
GSMUA_Achr2P17100_001	Banana	cytosol, plastid	54.31	55.64
Zm00001d032991_P001	Maize	cytosol	52.87	50.57
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	48.56	46.24
Zm00001d018813_P001	Maize	mitochondrion	31.1	31.71
Zm00001d046921_P001	Maize	cytosol	26.08	27.66
Zm00001d046922_P001	Maize	cytosol	24.64	26.75
Zm00001d049632_P001	Maize	cytosol	29.9	26.1
Zm00001d050862_P001	Maize	cytosol, peroxisome, plastid	27.03	24.78
Zm00001d016553_P001	Maize	cytosol	21.53	24.73
Zm00001d014986_P001	Maize	cytosol	19.38	22.31
Zm00001d014338_P001	Maize	cytosol	18.18	21.84
Zm00001d048310_P001	Maize	cytosol	20.57	20.09
Zm00001d027856_P001	Maize	cytosol	20.33	19.81
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	20.33	19.19
Zm00001d048898_P001	Maize	cytosol	19.62	18.85
Zm00001d033012_P001	Maize	cytosol	20.1	18.83
Zm00001d007596_P001	Maize	nucleus, plastid	19.86	18.82
Zm00001d026321_P001	Maize	cytosol	19.38	18.08
Zm00001d052253_P001	Maize	cytosol	17.94	17.73
Zm00001d002284_P003	Maize	mitochondrion	19.38	16.6
Zm00001d007538_P001	Maize	cytosol	10.05	14.14
Zm00001d019862_P001	Maize	cytosol	18.66	11.4

Protein Annotations

EntrezGene:100284020	Gene3D:2.120.10.80	MapMan:9.2.1.1.3	UniProt:A0A096QN59	ProteinID:AQK69395.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24412	PANTHER:PTHR24412:SF234
SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002217EE9	EnsemblPlantsGene:Zm00001d015744	EnsemblPlants:Zm00001d015744_P001
EnsemblPlants:Zm00001d015744_T001	SEG:seg	:	:	:	:

Description

Ring canal kelch

Coordinates

chr5:+:115568661..115571006

Molecular Weight (calculated)

45851.2 Da

IEP (calculated)

10.378

GRAVY (calculated)

-0.222

Length

418 amino acids

Sequence
(BLAST)

001: MDRRNRPAPL VDSSACFCRV DRSSAAAAAR RIPVSKACVQ PSLRASIHPL KPRPGAERSR GGACPLLPGL PDDLAIACLI RVPRADHWKL RLVCRKWCRL
101: LAGNYFYGLR RRLGLAEQWL YAVKRDGRDG RVSWDVLDPS RGEWRALPPV PGEYAEADGF GCAVLGGCHL YLLGGRDPRR GSAMRRVVFY SARSNRWHRA
201: PDMLRRRQFF DVCVMGNRLY VAGGEGGGGG LRSAEVFDPA KNRWSFVAEM AAPMAPFVSA VHGGRWFVKG IGAQQQVLSQ AYSPESDSWS IVLDGMVTGW
301: RSASACLNGR LYAAECMDGC RLRAYDEAVD AWSTCADSKQ HRGSSQAAAI VALHGRLFVV RNDMSVSAVQ VAAEAGKQRW QTLAGKAHTK SFVTGLLSNL
401: AGRSRAKNNI LHCQVLEV

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.