Factsheet for Zm00001d014203_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91835	Sorghum	cytosol, nucleus, plastid	94.81	94.59
Zm00001d033012_P001	Maize	cytosol	93.0	92.38
Zm00001d027856_P001	Maize	cytosol	72.91	75.29
Zm00001d048310_P001	Maize	cytosol	72.69	75.23
CDY33755	Canola	cytosol	17.38	62.6
GSMUA_Achr1P21630_001	Banana	cytosol	52.6	61.8
Zm00001d052253_P001	Maize	cytosol	58.01	60.76
GSMUA_Achr8P01380_001	Banana	cytosol	51.24	59.74
Bra026838.1-P	Field mustard	nucleus	51.92	56.51
CDX81631	Canola	nucleus	51.92	56.23
VIT_17s0000g05920.t01	Wine grape	cytosol	56.21	56.21
GSMUA_Achr8P17960_001	Banana	nucleus	52.6	56.01
CDY62015	Canola	nucleus	52.14	55.66
CDY49094	Canola	nucleus	52.37	54.72
Solyc04g005870.1.1	Tomato	cytosol	6.55	54.72
Solyc04g005670.1.1	Tomato	cytosol	49.89	54.7
KRH63378	Soybean	cytosol	53.5	53.74
Solyc03g113010.1.1	Tomato	cytosol	53.5	53.74
KRH54527	Soybean	cytosol	53.27	53.51
PGSC0003DMT400007346	Potato	nucleus	52.14	53.35
AT1G14330.1	Thale cress	nucleus	53.05	53.29
CDY60836	Canola	cytosol	45.6	53.16
Bra026575.1-P	Field mustard	nucleus	53.05	52.93
GSMUA_Achr10P...	Banana	nucleus	51.92	52.87
CDY09349	Canola	nucleus	52.82	52.7
CDY62176	Canola	nucleus	53.05	52.57
Bra017407.1-P	Field mustard	nucleus, plastid	51.92	52.39
KRH03453	Soybean	cytosol	47.86	51.96
Zm00001d048898_P001	Maize	cytosol	50.79	51.72
CDY17425	Canola	cytosol	46.73	51.62
PGSC0003DMT400046591	Potato	extracellular	53.05	51.54
CDY03028	Canola	cytosol	52.14	51.45
Bra024801.1-P	Field mustard	nucleus	52.37	51.21
CDY45190	Canola	nucleus	52.37	51.21
GSMUA_Achr2P14920_001	Banana	mitochondrion	55.08	51.05
AT1G26930.1	Thale cress	cytosol	47.86	50.36
Zm00001d007596_P001	Maize	nucleus, plastid	50.11	50.34
AT2G02870.1	Thale cress	nucleus	53.05	50.32
CDY46430	Canola	cytosol	48.31	50.23
KRH56929	Soybean	cytosol	46.05	50.12
CDY16205	Canola	nucleus	47.86	50.12
Bra016297.1-P	Field mustard	cytosol	48.08	50.0
CDY52764	Canola	cytosol	47.86	49.88
CDY33754	Canola	nucleus	27.54	48.8
PGSC0003DMT400059324	Potato	cytosol	51.47	47.5
GSMUA_Achr4P24130_001	Banana	nucleus	54.4	46.62
GSMUA_Achr3P01570_001	Banana	golgi	51.24	46.42
KRH45883	Soybean	cytosol	53.95	44.34
KRH74828	Soybean	cytosol	53.27	43.95
VIT_01s0026g02080.t01	Wine grape	nucleus	53.5	43.81
KRH70694	Soybean	cytosol	53.27	43.78
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	15.58	43.67
KRG99114	Soybean	cytosol	52.82	43.41
Zm00001d026321_P001	Maize	cytosol	41.53	41.07
Zm00001d002284_P003	Maize	mitochondrion	43.34	39.34
PGSC0003DMT400007391	Potato	cytosol	11.51	38.06
Zm00001d007538_P001	Maize	cytosol	23.02	34.34
Solyc05g007220.2.1	Tomato	nucleus	49.21	33.85
Zm00001d019862_P001	Maize	cytosol	40.86	26.46
Zm00001d032991_P001	Maize	cytosol	21.67	21.97
Zm00001d014338_P001	Maize	cytosol	17.16	21.84
Zm00001d015744_P001	Maize	plastid	19.19	20.33
Zm00001d016553_P001	Maize	cytosol	16.7	20.33
Zm00001d018813_P001	Maize	mitochondrion	18.51	20.0
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	19.64	19.82
Zm00001d014986_P001	Maize	cytosol	15.58	19.01
Zm00001d049632_P001	Maize	cytosol	20.54	19.0
Zm00001d050862_P001	Maize	cytosol, peroxisome, plastid	19.41	18.86
Zm00001d046922_P001	Maize	cytosol	13.54	15.58
Zm00001d046921_P001	Maize	cytosol	13.77	15.48

Protein Annotations

EMBL:BT067998	EnsemblPlants:Zm00001d014203_P001	EnsemblPlants:Zm00001d014203_T001	EnsemblPlantsGene:Zm00001d014203	EntrezGene:100383668	Gene3D:2.120.10.80
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
PANTHER:PTHR24413	PANTHER:PTHR24413:SF133	PFAM:PF01344	ProteinID:AQK65547.1	SEG:seg	SMART:SM00612
SUPFAM:SSF117281	UniParc:UPI000195CD6C	UniProt:C0PI79	MapMan:35.1	:	:

Description

CruP paralog1F-box/kelch-repeat protein SKIP11

Coordinates

chr5:+:36522150..36523481

Molecular Weight (calculated)

48899.0 Da

IEP (calculated)

6.700

GRAVY (calculated)

-0.409

Length

443 amino acids

Sequence
(BLAST)

001: MDLYDKREDM ALQDGDSCLA SRASRGGCDV DLQWVDGLLE GAGRKRRAPE DFEDEVQKMD EVDGGGKRSK PPSPQPHTPD IHEAHVPGRR TTVVAGGGEH
101: SGGGGDLIGE IGRDLSINCL LRLSRSEYGS VASLNHDFRS LVRGGGIYRL RRQNNIAEHW VYFSCNVLEW DAYDPYRKRW ISVPKMPPDE CFMCSDKESL
201: AVGTELLVFG MAHIVFRYSI LTNSWSRGEV MNSPRCLFGS ASVGEKAYVA GGTDSLGRIL SSAELYNSET HTWTPLPSMN KARKNCSGLF MDGKFYVIGG
301: VTNNNMVLTC GEVYDVQSKT WRVIENMSGG LNGVSGAPPL VAVVKNELYA ADYSEKDVKK YDKQNNRWIT LGKLPERSVS MNGWGLAFRA CGERLIVIGG
401: PRTPVGGTIE LTSWIPDDKP PVWNLMDRRP SGNFVYNCAV MSC

Best Arabidopsis Sequence Match ( AT2G02870.2 )
(BLAST)

001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC

Arabidopsis Description

SKIP11F-box/kelch-repeat protein SKIP11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L736]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.