Factsheet for Zm00001d048898_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83795	Sorghum	cytosol	89.2	87.0
Zm00001d007596_P001	Maize	nucleus, plastid	85.75	84.58
Os11t0602800-01	Rice	nucleus	74.48	75.0
Solyc04g005870.1.1	Tomato	cytosol	7.13	58.49
GSMUA_Achr1P21630_001	Banana	cytosol	46.44	53.58
CDY33755	Canola	cytosol	14.94	52.85
Solyc04g005670.1.1	Tomato	cytosol	47.36	50.99
Zm00001d052253_P001	Maize	cytosol	49.43	50.83
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	51.72	50.79
GSMUA_Achr8P01380_001	Banana	cytosol	44.37	50.79
Zm00001d033012_P001	Maize	cytosol	51.49	50.22
Zm00001d027856_P001	Maize	cytosol	49.2	49.88
Zm00001d048310_P001	Maize	cytosol	48.97	49.77
CDY62015	Canola	nucleus	47.13	49.4
GSMUA_Achr8P17960_001	Banana	nucleus	47.13	49.28
PGSC0003DMT400007346	Potato	nucleus	48.74	48.96
VIT_17s0000g05920.t01	Wine grape	cytosol	49.2	48.31
CDY49094	Canola	nucleus	46.9	48.11
CDY52764	Canola	cytosol	46.9	48.0
AT1G26930.1	Thale cress	cytosol	46.44	47.98
CDY46430	Canola	cytosol	46.9	47.89
CDX81631	Canola	nucleus	44.83	47.68
Bra026838.1-P	Field mustard	nucleus	44.6	47.67
Bra016297.1-P	Field mustard	cytosol	46.67	47.65
AT1G14330.1	Thale cress	nucleus	47.82	47.17
KRH54527	Soybean	cytosol	47.82	47.17
CDY16205	Canola	nucleus	45.75	47.04
KRH56929	Soybean	cytosol	43.91	46.93
CDY60836	Canola	cytosol	40.92	46.84
KRH03453	Soybean	cytosol	43.91	46.81
Solyc03g113010.1.1	Tomato	cytosol	47.36	46.71
KRH63378	Soybean	cytosol	47.13	46.49
GSMUA_Achr10P...	Banana	nucleus	46.21	46.21
CDY17425	Canola	cytosol	42.53	46.13
Bra026575.1-P	Field mustard	nucleus	46.9	45.95
CDY09349	Canola	nucleus	46.67	45.72
CDY62176	Canola	nucleus	46.67	45.41
Bra017407.1-P	Field mustard	nucleus, plastid	45.75	45.33
PGSC0003DMT400059324	Potato	cytosol	49.89	45.21
PGSC0003DMT400046591	Potato	extracellular	47.13	44.96
CDY45190	Canola	nucleus	46.44	44.59
AT2G02870.1	Thale cress	nucleus	47.82	44.54
Bra024801.1-P	Field mustard	nucleus	46.21	44.37
CDY03028	Canola	cytosol	45.75	44.32
GSMUA_Achr2P14920_001	Banana	mitochondrion	45.98	41.84
GSMUA_Achr3P01570_001	Banana	golgi	45.98	40.9
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	14.71	40.51
CDY33754	Canola	nucleus	23.22	40.4
Zm00001d026321_P001	Maize	cytosol	41.15	39.96
GSMUA_Achr4P24130_001	Banana	nucleus	46.44	39.07
PGSC0003DMT400007391	Potato	cytosol	11.95	38.81
KRH45883	Soybean	cytosol	48.05	38.78
KRG99114	Soybean	cytosol	47.59	38.4
KRH74828	Soybean	cytosol	47.36	38.36
VIT_01s0026g02080.t01	Wine grape	nucleus	47.59	38.26
KRH70694	Soybean	cytosol	47.13	38.03
Zm00001d002284_P003	Maize	mitochondrion	42.3	37.7
Zm00001d007538_P001	Maize	cytosol	22.99	33.67
Solyc05g007220.2.1	Tomato	nucleus	47.59	32.14
Zm00001d019862_P001	Maize	cytosol	40.69	25.88
Zm00001d014338_P001	Maize	cytosol	18.39	22.99
Zm00001d016553_P001	Maize	cytosol	17.47	20.88
Zm00001d032991_P001	Maize	cytosol	20.46	20.37
Zm00001d015744_P001	Maize	plastid	18.85	19.62
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	19.77	19.59
Zm00001d050862_P001	Maize	cytosol, peroxisome, plastid	20.0	19.08
Zm00001d014986_P001	Maize	cytosol	15.63	18.73
Zm00001d049632_P001	Maize	cytosol	20.46	18.58
Zm00001d018813_P001	Maize	mitochondrion	17.47	18.54
Zm00001d046922_P001	Maize	cytosol	14.25	16.1
Zm00001d046921_P001	Maize	cytosol	14.48	15.99

Protein Annotations

EMBL:BT063820	EnsemblPlants:Zm00001d048898_P001	EnsemblPlants:Zm00001d048898_T001	EnsemblPlantsGene:Zm00001d048898	EntrezGene:100382301	Gene3D:2.120.10.80
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
PANTHER:PTHR24413	PANTHER:PTHR24413:SF125	PFAM:PF01344	ProteinID:AQK49167.1	SEG:seg	SMART:SM00612
SUPFAM:SSF117281	UniParc:UPI0001948B3E	UniProt:C0P6A1	MapMan:35.1	:	:

Description

F-box/kelch-repeat protein SKIP11

Coordinates

chr4:+:7335645..7336952

Molecular Weight (calculated)

47733.9 Da

IEP (calculated)

5.351

GRAVY (calculated)

-0.159

Length

435 amino acids

Sequence
(BLAST)

001: MLGDQRMILG LDSATSSSTA PDLTRAEEDP SVSRSCVIDR LQVGWAQKGG QVEGLVNCYS KKKNKTGSGS RNLAARAWSS EMEGSDEGGE VNTGDLIGGI
101: GRELAISCLL RLPRSYYYDV ACVNRSFYSL VRFGELYRLR REAGIVEQMI YCSCNVLEWE GFDPRRQRWF SIPSMPPIEC FTLADKESLA VGTNILVFGK
201: RVEAHVVLRY SLLTNSWTTG EMMNTPRCLF GSASFGEKAI VAGGIGQNGT LDSAELYDSE MQTWTTLPSM NRARQMCSGF FMDGKFYVIG GKSERHNEIL
301: SCAEEFDLES STWRLIPDMA QGLNGGSGAP PLVAVVNNEL YAADYATKEV RKYDKENNAW ITLGLLPGRY TSVHGWGIAF RSCGDMLIVI GAMSAGGSGV
401: IEICSWVPNN GLPDWKIIGT RRSGSFVYNC AVMSC

Best Arabidopsis Sequence Match ( AT1G14330.1 )
(BLAST)

001: MVEDRTYLMS RIFSSSRLSE SKWPYMYPQP EDSSESNLIN GKRALENDVD ELRQSKSPRL MGFSIHGNEA IEEDEQEQDQ SDSNNNGNSD GDSLINDIGR
101: DNSISCLIRC SRSGYGSIAS LNRSFRSLVK TGEIYRLRRQ NQIVEHWVYF SCQLLEWVAF NPFERRWMNL PTMPSGVTFM CADKESLAVG TDLLVLGKDD
201: YSSHVIYRYS LLTNSWSSGM RMNSPRCLFG SASLGEIAIF AGGFDSFGKI SDSAEMYNSE LQTWTTLPKM NKPRKMCSGV FMDGKFYVIG GIGGNDSKVL
301: TCGEEFDLET KKWTEIPEMS PPRSREMPAA AEAPPLVAVV NNELYAADHA DMEVRKYDKE SKKWFTLGRL PERADSVNGW GLAFRACGER LIVIGGPRSS
401: GGGYIELNSW IPSSDRSPPL WTLLGRKHSS NFVYNCAVMG C

Arabidopsis Description

At1g14330/F14L17_7 [Source:UniProtKB/TrEMBL;Acc:Q9M9S9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.