Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026575.1-P | Field mustard | nucleus | 99.32 | 99.32 |
| CDY62176 | Canola | nucleus | 97.75 | 97.09 |
| CDY03028 | Canola | cytosol | 87.16 | 86.19 |
| CDY17425 | Canola | cytosol | 77.48 | 85.79 |
| CDY45190 | Canola | nucleus | 86.94 | 85.21 |
| AT2G02870.1 | Thale cress | nucleus | 88.96 | 84.58 |
| CDY60836 | Canola | cytosol | 71.85 | 83.95 |
| CDY33755 | Canola | cytosol | 22.3 | 80.49 |
| CDY62015 | Canola | nucleus | 71.17 | 76.14 |
| CDX81631 | Canola | nucleus | 68.92 | 74.82 |
| CDY49094 | Canola | nucleus | 71.4 | 74.76 |
| CDY33754 | Canola | nucleus | 38.74 | 68.8 |
| Solyc04g005670.1.1 | Tomato | cytosol | 57.88 | 63.61 |
| TraesCS4D01G286700.1 | Wheat | cytosol | 47.07 | 63.33 |
| PGSC0003DMT400007346 | Potato | nucleus | 61.04 | 62.59 |
| CDY46430 | Canola | cytosol | 59.46 | 61.97 |
| CDY52764 | Canola | cytosol | 59.23 | 61.88 |
| CDY16205 | Canola | nucleus | 58.33 | 61.23 |
| Solyc04g005870.1.1 | Tomato | cytosol | 7.21 | 60.38 |
| TraesCS4A01G493800.1 | Wheat | cytosol | 34.01 | 60.16 |
| GSMUA_Achr4P09990_001 | Banana | cytosol | 55.63 | 57.58 |
| PGSC0003DMT400059324 | Potato | cytosol | 61.94 | 57.29 |
| Zm00001d052253_P001 | Maize | cytosol | 54.28 | 56.97 |
| TraesCS6D01G285100.1 | Wheat | cytosol, nucleus, plastid | 54.5 | 56.94 |
| GSMUA_Achr8P01380_001 | Banana | cytosol | 48.65 | 56.84 |
| TraesCS6A01G306000.1 | Wheat | cytosol | 54.28 | 56.71 |
| TraesCS6B01G334300.1 | Wheat | cytosol, nucleus, plastid | 54.28 | 56.71 |
| HORVU6Hr1G075590.1 | Barley | cytosol, nucleus, plastid | 54.05 | 56.47 |
| GSMUA_Achr7P20970_001 | Banana | cytosol | 50.0 | 56.2 |
| KXG30756 | Sorghum | cytosol | 53.6 | 56.0 |
| GSMUA_Achr1P21630_001 | Banana | cytosol | 46.85 | 55.17 |
| Os02t0748300-01 | Rice | cytosol | 52.93 | 55.16 |
| KXG40080 | Sorghum | cytosol | 52.93 | 54.91 |
| TraesCS4A01G016200.1 | Wheat | cytosol | 53.15 | 54.76 |
| GSMUA_Achr4P00520_001 | Banana | cytosol | 47.97 | 54.76 |
| Zm00001d048310_P001 | Maize | cytosol | 52.7 | 54.67 |
| TraesCS7A01G004600.1 | Wheat | cytosol | 44.82 | 54.67 |
| Os03t0171600-01 | Rice | cytosol | 52.93 | 54.52 |
| Zm00001d027856_P001 | Maize | cytosol | 52.48 | 54.31 |
| HORVU4Hr1G075310.1 | Barley | cytosol | 52.93 | 53.53 |
| CDX68177 | Canola | cytosol | 50.0 | 53.24 |
| CDX73096 | Canola | cytosol | 47.97 | 53.12 |
| Zm00001d014203_P001 | Maize | cytosol, nucleus, plastid | 52.7 | 52.82 |
| OQU91835 | Sorghum | cytosol, nucleus, plastid | 52.48 | 52.48 |
| KRH45883 | Soybean | cytosol | 63.51 | 52.32 |
| CDX85842 | Canola | cytosol | 50.23 | 52.22 |
| CDX96551 | Canola | cytosol | 47.75 | 52.22 |
| TraesCS7D01G007100.1 | Wheat | cytosol | 43.69 | 52.15 |
| VIT_01s0026g02080.t01 | Wine grape | nucleus | 63.29 | 51.94 |
| KRH74828 | Soybean | cytosol | 62.61 | 51.77 |
| KRG99114 | Soybean | cytosol | 62.61 | 51.58 |
| KRH70694 | Soybean | cytosol | 62.39 | 51.39 |
| TraesCS7D01G005100.1 | Wheat | cytosol | 24.77 | 51.16 |
| Zm00001d033012_P001 | Maize | cytosol | 51.35 | 51.12 |
| GSMUA_Achr8P17960_001 | Banana | nucleus | 47.52 | 50.72 |
| CDY70379 | Canola | cytosol | 17.79 | 50.0 |
| GSMUA_Achr10P... | Banana | nucleus | 48.87 | 49.89 |
| PGSC0003DMT400091785 | Potato | cytosol, mitochondrion, plastid | 17.34 | 48.73 |
| Os11t0602800-01 | Rice | nucleus | 46.4 | 47.69 |
| TraesCS4A01G487800.1 | Wheat | cytosol | 27.7 | 47.67 |
| GSMUA_Achr2P14920_001 | Banana | mitochondrion | 50.45 | 46.86 |
| Zm00001d048898_P001 | Maize | cytosol | 45.72 | 46.67 |
| HORVU2Hr1G057140.1 | Barley | cytosol | 19.37 | 46.24 |
| HORVU2Hr1G057150.1 | Barley | cytosol | 19.37 | 46.24 |
| TraesCS4A01G492300.1 | Wheat | cytosol, golgi, plastid | 39.86 | 45.97 |
| Zm00001d007596_P001 | Maize | nucleus, plastid | 45.27 | 45.58 |
| OQU83795 | Sorghum | cytosol | 45.27 | 45.07 |
| TraesCS4A01G489600.1 | Wheat | cytosol | 38.29 | 44.97 |
| TraesCS4A01G489300.1 | Wheat | cytosol | 38.51 | 44.88 |
| GSMUA_Achr3P01570_001 | Banana | golgi | 48.65 | 44.17 |
| CDX80156 | Canola | cytosol | 36.49 | 42.74 |
| CDY31534 | Canola | cytosol | 36.04 | 42.67 |
| GSMUA_Achr4P24130_001 | Banana | nucleus | 49.1 | 42.17 |
| Solyc05g007220.2.1 | Tomato | nucleus | 58.78 | 40.53 |
| PGSC0003DMT400007391 | Potato | cytosol | 12.16 | 40.3 |
| HORVU7Hr1G000010.5 | Barley | cytosol | 39.64 | 40.18 |
| CDY66938 | Canola | cytosol, mitochondrion | 15.09 | 38.07 |
| CDY53460 | Canola | cytosol | 14.41 | 36.36 |
| CDX82682 | Canola | cytosol | 25.45 | 36.1 |
| CDY65956 | Canola | cytosol | 14.64 | 34.57 |
| HORVU7Hr1G000070.1 | Barley | cytosol | 40.54 | 34.29 |
| TraesCS4A01G491100.1 | Wheat | cytosol | 39.19 | 33.08 |
| CDY34175 | Canola | cytosol | 30.18 | 32.6 |
| CDY28493 | Canola | cytosol | 29.95 | 32.36 |
| TraesCS4A01G493200.1 | Wheat | cytosol, plasma membrane | 33.56 | 31.43 |
| CDY13683 | Canola | cytosol | 30.41 | 31.18 |
| CDY52395 | Canola | cytosol | 30.18 | 30.95 |
| CDY36146 | Canola | cytosol | 29.05 | 30.94 |
| CDY63005 | Canola | cytosol | 28.83 | 30.7 |
| CDY69929 | Canola | cytosol | 28.83 | 30.7 |
| CDY64780 | Canola | cytosol | 29.73 | 30.41 |
| CDX90239 | Canola | cytosol | 26.13 | 29.22 |
| CDY49979 | Canola | cytosol | 26.35 | 28.68 |
| CDY12345 | Canola | cytosol | 28.83 | 28.13 |
| CDY01301 | Canola | cytosol | 8.56 | 24.2 |
| CDY49977 | Canola | cytosol | 23.87 | 22.55 |
| CDY04697 | Canola | cytosol | 10.81 | 21.52 |
| CDY30645 | Canola | nucleus | 10.59 | 21.08 |
| CDY12647 | Canola | cytosol | 16.67 | 20.44 |
| CDX96091 | Canola | cytosol | 17.12 | 20.38 |
| CDY36145 | Canola | cytosol | 15.99 | 20.29 |
| CDY66857 | Canola | cytosol | 16.22 | 20.22 |
| CDX81755 | Canola | cytosol | 17.57 | 20.0 |
| CDY70128 | Canola | cytosol | 15.09 | 19.88 |
| CDY01812 | Canola | cytosol | 16.67 | 19.84 |
| CDY22982 | Canola | cytosol | 15.32 | 19.65 |
| CDY33348 | Canola | cytosol | 7.88 | 19.44 |
| CDX82306 | Canola | cytosol | 15.09 | 19.36 |
| CDX99248 | Canola | cytosol | 15.09 | 19.25 |
| CDY18573 | Canola | cytosol | 15.09 | 19.25 |
| CDY35074 | Canola | cytosol | 9.01 | 19.14 |
| CDY58259 | Canola | cytosol | 14.86 | 19.02 |
| CDY64382 | Canola | plastid | 14.64 | 19.01 |
| CDY51562 | Canola | cytosol | 15.32 | 18.94 |
| CDY08233 | Canola | mitochondrion | 18.47 | 18.85 |
| CDX90085 | Canola | plastid | 14.64 | 18.84 |
| CDY11811 | Canola | plastid | 14.64 | 18.84 |
| CDY52247 | Canola | cytosol | 13.51 | 18.75 |
| CDY15708 | Canola | cytosol | 14.41 | 18.66 |
| CDY03923 | Canola | cytosol | 14.19 | 18.64 |
| CDY26117 | Canola | cytosol | 18.24 | 18.62 |
| CDY33062 | Canola | mitochondrion, plastid | 18.24 | 18.62 |
| CDY02451 | Canola | cytosol | 18.02 | 18.39 |
| CDY10574 | Canola | cytosol | 18.02 | 18.39 |
| CDY24045 | Canola | mitochondrion | 18.02 | 18.39 |
| CDY58793 | Canola | cytosol | 14.86 | 18.38 |
| CDX96822 | Canola | extracellular, vacuole | 17.79 | 18.29 |
| CDY54825 | Canola | cytosol | 7.88 | 18.13 |
| CDX99882 | Canola | mitochondrion, plastid | 16.22 | 18.09 |
| CDY26295 | Canola | mitochondrion, plastid | 15.99 | 17.84 |
| CDY64883 | Canola | golgi, plastid | 16.22 | 17.52 |
| CDY35075 | Canola | cytosol | 7.21 | 17.39 |
| CDX76807 | Canola | cytosol | 14.41 | 17.34 |
| CDY34765 | Canola | cytosol | 14.41 | 17.2 |
| CDY17172 | Canola | cytosol | 5.41 | 16.67 |
| CDY00415 | Canola | mitochondrion | 7.66 | 15.89 |
| CDY01300 | Canola | cytosol | 7.66 | 15.18 |
| CDY15707 | Canola | cytosol, plastid | 11.26 | 14.16 |
| CDY03921 | Canola | cytosol, extracellular, plasma membrane | 9.68 | 12.18 |
Protein Annotations
| EnsemblPlants:CDY09349 | EnsemblPlantsGene:GSBRNA2T00030807001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF138 | PFAM:PF01344 |
| ProteinID:CDY09349 | ProteinID:CDY09349.1 | SEG:seg | SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI0004EE84A4 |
| UniProt:A0A078F8J1 | MapMan:35.1 | : | : | : | : |
Description
BnaA02g26610DBnaA02g26610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8J1]
Coordinates
chrLK031995:-:125154..127383
Molecular Weight (calculated)
49336.0 Da
IEP (calculated)
6.187
GRAVY (calculated)
-0.421
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEERSPDSC LSSRLFSTSR ISESSWSNSF MFPEHDDKLN NGKRALEVAS EIRPTKSLKL MGFSIQYDSD SSDYSGTSQE SDSNNNGGDS TDSHSLFNEI
101: GRDNSIDCLI RCSRSDYGSI ASLSRNFRSL VKSGEIYRLR RQNGFVEHWV YFSCQPLEWV AFDPVERRWM QLPTMPSSVT FMGADKESLA VGTDLLVLGQ
201: AGFSSYVIYR YSLLTNSWSS GMEMNSPRCL FGSASLGEIA IFAGGIDSQR KILDSAEMYN SELQTWTTLP RMHKPRKMCS GVFMDGKFYV IGGIGGADSK
301: LLTCGEEYDL DTKKWTHIPD LSPPRSRADV SSANDAPPLV AVVNNQLYAA DHADMEVRKY DKEKKRWLTV GRLPERAGSV NGWGLAFRAC GERLIVIGGP
401: RNSGGGFIEL NSWIPSDGGG PPQWTLLDRK HSPNFVYNCA VMGC
101: GRDNSIDCLI RCSRSDYGSI ASLSRNFRSL VKSGEIYRLR RQNGFVEHWV YFSCQPLEWV AFDPVERRWM QLPTMPSSVT FMGADKESLA VGTDLLVLGQ
201: AGFSSYVIYR YSLLTNSWSS GMEMNSPRCL FGSASLGEIA IFAGGIDSQR KILDSAEMYN SELQTWTTLP RMHKPRKMCS GVFMDGKFYV IGGIGGADSK
301: LLTCGEEYDL DTKKWTHIPD LSPPRSRADV SSANDAPPLV AVVNNQLYAA DHADMEVRKY DKEKKRWLTV GRLPERAGSV NGWGLAFRAC GERLIVIGGP
401: RNSGGGFIEL NSWIPSDGGG PPQWTLLDRK HSPNFVYNCA VMGC
001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC
Arabidopsis Description
SKIP11F-box/kelch-repeat protein SKIP11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L736]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.