CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90085	Canola	plastid	97.39	97.39
AT1G27420.1	Thale cress	cytosol, plastid	87.54	87.28
CDY15708	Canola	cytosol	70.72	71.14
CDY66857	Canola	cytosol	72.46	70.22
CDY36145	Canola	cytosol	70.43	69.43
CDY70128	Canola	cytosol	66.96	68.55
CDY52247	Canola	cytosol	63.19	68.12
CDY03923	Canola	cytosol	63.77	65.09
CDY54825	Canola	cytosol	36.23	64.77
CDY64382	Canola	plastid	64.06	64.62
CDY15707	Canola	cytosol, plastid	55.65	54.39
CDY03921	Canola	cytosol, extracellular, plasma membrane	44.64	43.63
CDY12647	Canola	cytosol	39.71	37.85
CDY01812	Canola	cytosol	38.55	35.66
CDX96091	Canola	cytosol	38.26	35.39
CDY64883	Canola	golgi, plastid	38.84	32.6
CDY35074	Canola	cytosol	12.46	20.57
CDY26117	Canola	cytosol	25.51	20.23
CDY08233	Canola	mitochondrion	25.51	20.23
CDY10574	Canola	cytosol	25.22	20.0
CDY02451	Canola	cytosol	25.22	20.0
CDY51562	Canola	cytosol	20.29	19.5
CDY24045	Canola	mitochondrion	24.35	19.31
CDY33062	Canola	mitochondrion, plastid	24.35	19.31
CDY58793	Canola	cytosol	20.0	19.22
CDY01301	Canola	cytosol	8.7	19.11
CDX99248	Canola	cytosol	19.13	18.97
CDX99882	Canola	mitochondrion, plastid	21.74	18.84
CDX82306	Canola	cytosol	18.84	18.79
CDY26295	Canola	mitochondrion, plastid	21.45	18.59
CDY22982	Canola	cytosol	18.55	18.5
CDY58259	Canola	cytosol	18.26	18.16
CDY18573	Canola	cytosol	18.26	18.1
CDX81755	Canola	cytosol	19.71	17.44
CDY33348	Canola	cytosol	8.99	17.22
CDX76807	Canola	cytosol	18.26	17.07
CDY31534	Canola	cytosol	18.55	17.07
CDX80156	Canola	cytosol	18.55	16.89
CDY34765	Canola	cytosol	17.97	16.67
CDY46430	Canola	cytosol	20.29	16.43
CDY16205	Canola	nucleus	20.0	16.31
CDY34175	Canola	cytosol	19.42	16.3
CDY28493	Canola	cytosol	19.42	16.3
CDY52764	Canola	cytosol	20.0	16.24
CDX96822	Canola	extracellular, vacuole	20.29	16.2
CDY33754	Canola	nucleus	11.59	16.0
CDY01300	Canola	cytosol	10.14	15.62
CDY60836	Canola	cytosol	17.1	15.53
CDY17425	Canola	cytosol	17.97	15.46
CDY17172	Canola	cytosol	6.38	15.28
CDY62176	Canola	nucleus	19.42	14.99
CDY62015	Canola	nucleus	17.97	14.94
CDY65956	Canola	cytosol	8.12	14.89
CDY49094	Canola	nucleus	18.26	14.86
CDY04697	Canola	cytosol	9.57	14.8
CDY30645	Canola	nucleus	9.57	14.8
CDY09349	Canola	nucleus	18.84	14.64
CDY45190	Canola	nucleus	19.13	14.57
CDY13683	Canola	cytosol	18.26	14.55
CDX96551	Canola	cytosol	17.1	14.53
CDY03028	Canola	cytosol	18.84	14.48
CDX73096	Canola	cytosol	16.81	14.46
CDX68177	Canola	cytosol	17.39	14.39
CDX81631	Canola	nucleus	16.81	14.18
CDY52395	Canola	cytosol	17.68	14.09
CDX85842	Canola	cytosol	17.39	14.05
CDY00415	Canola	mitochondrion	8.7	14.02
CDX90239	Canola	cytosol	15.94	13.85
CDX82682	Canola	cytosol	12.46	13.74
CDY49979	Canola	cytosol	15.94	13.48
CDY63005	Canola	cytosol	16.23	13.43
CDY70379	Canola	cytosol	6.09	13.29
CDY36146	Canola	cytosol	15.94	13.19
CDY69929	Canola	cytosol	15.94	13.19
CDY53460	Canola	cytosol	6.67	13.07
CDY64780	Canola	cytosol	15.94	12.67
CDY12345	Canola	cytosol	15.94	12.09
CDY66938	Canola	cytosol, mitochondrion	6.09	11.93
CDY49977	Canola	cytosol	14.2	10.43
CDY35075	Canola	cytosol	4.93	9.24
CDY33755	Canola	cytosol	2.9	8.13

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078FEV6	EnsemblPlants:CDY11811	ProteinID:CDY11811	ProteinID:CDY11811.1
InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00050071001	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF01344	PANTHER:PTHR24412	PANTHER:PTHR24412:SF377	SMART:SM00612
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EC42F0	SEG:seg	:	:

Description

BnaC03g57670DBnaC03g57670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEV6]

Coordinates

chrLK032014:-:797091..798350

Molecular Weight (calculated)

38846.9 Da

IEP (calculated)

6.292

GRAVY (calculated)

-0.239

Length

345 amino acids

Sequence
(BLAST)

001: MDSSSSSLIP GLTDDAAELC LSRTPRSNFR ITSQVCRRWR TFLRSEHFAS VRELTGTVEE FMCVLMESEC GRDVYWEVFD ASGNKLGQIP PVPGPMKRGF
101: GVAVLGGGKI VFIGGYTEVE GSSSINSTIV SASADVYEFD PASNSWRKLA GMNIPRYNFA FAVVNGLLYV IRGYSTDAYS LSNSEVYNPE TNRWSLMDCP
201: NRPVWRGFAF SFKSKLFAVG NGSRFIDIYD PKTETWQELD SEQSISVYSY TVVRNKVYFM DRNMPGRLGV FDPEENCWSS VGVPPRAGGF WFRLGEWNNK
301: VLLFSRVCGH ETLMYDLDKE NGSKWRVCDQ IKPSASHLTS VLINF

Best Arabidopsis Sequence Match ( AT1G27420.1 )
(BLAST)

001: MVVESSSSPI IPGLTDDVAE LCVSKIPRSS FQITSQVCRR WRSFLRSQHF AAVRKLTGTV EEFLCVLMES ECGRDVYWEV FDASGNKLGQ IPPVPGPLKR
101: GFGVAVLDGG KIVFFGGYTE VEGSGINSTT VSASADVYEF DPANNSWRKL AGMNIPRYNF AFAEVNGLLY VIRGYSTDTY SLSNAEVYNP KTNQWSLMHC
201: PNRPVWRGFA FAFSSKLYAV GNGSRFIDIY DPKTQTWEEL NSEQSVSVYS YTVVRNKVYF MDRNMPGRLG VFDPEENSWS SVFVPPREGG FWVRLGVWNN
301: KVLLFSRVCG HETLMYDLDK EKGSKWRVCD QIKPSASQLA SVLINF

Arabidopsis Description

Putative F-box/kelch-repeat protein At1g27420 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZJ3]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.