Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001739.1-P | Field mustard | cytosol | 99.42 | 99.42 |
| CDY22982 | Canola | cytosol | 97.4 | 97.4 |
| CDX99248 | Canola | cytosol | 88.73 | 88.22 |
| CDY18573 | Canola | cytosol | 86.71 | 86.21 |
| CDY58259 | Canola | cytosol | 86.42 | 86.17 |
| AT3G63220.2 | Thale cress | cytosol | 86.13 | 84.66 |
| VIT_07s0151g00770.t01 | Wine grape | cytosol | 72.83 | 73.04 |
| Solyc09g065400.1.1 | Tomato | cytosol | 71.39 | 71.59 |
| PGSC0003DMT400049746 | Potato | cytosol | 71.1 | 71.3 |
| KRH67237 | Soybean | cytosol | 69.94 | 70.14 |
| KRH71403 | Soybean | cytosol | 69.08 | 69.48 |
| KRH32035 | Soybean | cytosol | 69.08 | 69.48 |
| KRG95556 | Soybean | cytosol | 69.08 | 69.28 |
| Solyc06g008690.1.1 | Tomato | cytosol | 65.32 | 65.51 |
| PGSC0003DMT400013635 | Potato | cytosol | 65.32 | 65.51 |
| GSMUA_Achr6P24370_001 | Banana | cytosol | 58.38 | 58.21 |
| OQU82118 | Sorghum | cytosol | 58.38 | 58.05 |
| Os10t0388200-01 | Rice | cytosol | 58.09 | 57.93 |
| TraesCS6B01G243200.1 | Wheat | cytosol | 58.96 | 57.79 |
| TraesCS6D01G195800.1 | Wheat | cytosol | 58.67 | 57.51 |
| Zm00001d014338_P001 | Maize | cytosol | 57.8 | 57.47 |
| TraesCS7B01G234000.1 | Wheat | cytosol | 54.91 | 57.23 |
| TraesCS6A01G211500.1 | Wheat | extracellular, golgi | 47.4 | 53.25 |
| CDX81755 | Canola | cytosol | 30.64 | 27.18 |
| CDY33348 | Canola | cytosol | 13.87 | 26.67 |
| CDY35074 | Canola | cytosol | 15.32 | 25.36 |
| CDX96822 | Canola | extracellular, vacuole | 30.92 | 24.77 |
| CDY34765 | Canola | cytosol | 26.01 | 24.19 |
| CDX76807 | Canola | cytosol | 25.72 | 24.12 |
| CDY51562 | Canola | cytosol | 24.57 | 23.68 |
| CDY58793 | Canola | cytosol | 24.28 | 23.4 |
| CDY12647 | Canola | cytosol | 23.7 | 22.65 |
| CDY01301 | Canola | cytosol | 10.12 | 22.29 |
| CDY70379 | Canola | cytosol | 10.12 | 22.15 |
| CDY31534 | Canola | cytosol | 23.41 | 21.6 |
| CDY17172 | Canola | cytosol | 8.96 | 21.53 |
| CDX80156 | Canola | cytosol | 23.41 | 21.37 |
| CDY01812 | Canola | cytosol | 22.83 | 21.18 |
| CDX96091 | Canola | cytosol | 22.54 | 20.91 |
| CDX99882 | Canola | mitochondrion, plastid | 23.99 | 20.85 |
| CDY26295 | Canola | mitochondrion, plastid | 23.7 | 20.6 |
| CDY35075 | Canola | cytosol | 10.69 | 20.11 |
| CDY64883 | Canola | golgi, plastid | 23.41 | 19.71 |
| CDX90085 | Canola | plastid | 19.08 | 19.13 |
| CDY11811 | Canola | plastid | 18.79 | 18.84 |
| CDY52247 | Canola | cytosol | 17.34 | 18.75 |
| CDY70128 | Canola | cytosol | 18.21 | 18.69 |
| CDX96551 | Canola | cytosol | 21.68 | 18.47 |
| CDY64382 | Canola | plastid | 18.21 | 18.42 |
| CDY24045 | Canola | mitochondrion | 23.12 | 18.39 |
| CDY03923 | Canola | cytosol | 17.92 | 18.34 |
| CDY01300 | Canola | cytosol | 11.85 | 18.3 |
| CDY36145 | Canola | cytosol | 18.5 | 18.29 |
| CDX68177 | Canola | cytosol | 21.97 | 18.23 |
| CDY15708 | Canola | cytosol | 17.92 | 18.08 |
| CDY66857 | Canola | cytosol | 18.5 | 17.98 |
| CDX73096 | Canola | cytosol | 20.81 | 17.96 |
| CDY33062 | Canola | mitochondrion, plastid | 22.54 | 17.93 |
| CDY00415 | Canola | mitochondrion | 10.98 | 17.76 |
| CDY10574 | Canola | cytosol | 22.25 | 17.7 |
| CDX85842 | Canola | cytosol | 21.68 | 17.56 |
| CDY02451 | Canola | cytosol | 21.97 | 17.47 |
| CDY26117 | Canola | cytosol | 21.68 | 17.24 |
| CDY08233 | Canola | mitochondrion | 21.68 | 17.24 |
| CDY33754 | Canola | nucleus | 12.43 | 17.2 |
| CDY04697 | Canola | cytosol | 10.98 | 17.04 |
| CDY16205 | Canola | nucleus | 20.52 | 16.78 |
| CDX90239 | Canola | cytosol | 19.08 | 16.62 |
| CDY30645 | Canola | nucleus | 10.69 | 16.59 |
| CDY54825 | Canola | cytosol | 9.25 | 16.58 |
| CDY60836 | Canola | cytosol | 18.21 | 16.58 |
| CDY46430 | Canola | cytosol | 19.94 | 16.2 |
| CDX81631 | Canola | nucleus | 19.08 | 16.14 |
| CDY52764 | Canola | cytosol | 19.65 | 16.0 |
| CDY49979 | Canola | cytosol | 18.79 | 15.93 |
| CDY62015 | Canola | nucleus | 19.08 | 15.9 |
| CDY17425 | Canola | cytosol | 18.21 | 15.71 |
| CDX82682 | Canola | cytosol | 13.87 | 15.34 |
| CDY49094 | Canola | nucleus | 18.79 | 15.33 |
| CDY34175 | Canola | cytosol | 18.21 | 15.33 |
| CDY15707 | Canola | cytosol, plastid | 15.61 | 15.3 |
| CDY62176 | Canola | nucleus | 19.65 | 15.21 |
| CDY09349 | Canola | nucleus | 19.36 | 15.09 |
| CDY28493 | Canola | cytosol | 17.92 | 15.09 |
| CDY65956 | Canola | cytosol | 8.09 | 14.89 |
| CDY45190 | Canola | nucleus | 19.08 | 14.57 |
| CDY03028 | Canola | cytosol | 18.79 | 14.48 |
| CDY13683 | Canola | cytosol | 17.63 | 14.09 |
| CDY52395 | Canola | cytosol | 17.34 | 13.86 |
| HORVU6Hr1G007080.1 | Barley | cytosol | 3.47 | 13.79 |
| CDY64780 | Canola | cytosol | 16.76 | 13.36 |
| CDY36146 | Canola | cytosol | 15.9 | 13.19 |
| CDY69929 | Canola | cytosol | 15.9 | 13.19 |
| CDY63005 | Canola | cytosol | 15.9 | 13.19 |
| CDY12345 | Canola | cytosol | 17.05 | 12.97 |
| CDY66938 | Canola | cytosol, mitochondrion | 6.36 | 12.5 |
| CDY33755 | Canola | cytosol | 4.34 | 12.2 |
| CDY49977 | Canola | cytosol | 16.47 | 12.13 |
| CDY03921 | Canola | cytosol, extracellular, plasma membrane | 11.85 | 11.61 |
| CDY53460 | Canola | cytosol | 5.49 | 10.8 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EnsemblPlants:CDX82306 | ProteinID:CDX82306 | ProteinID:CDX82306.1 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00137415001 | InterPro:IPR001810 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 | PANTHER:PTHR24414 |
| PANTHER:PTHR24414:SF29 | SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI0004EEDB29 |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g35150D
Coordinates
chrLK031828:-:484036..485248
Molecular Weight (calculated)
38059.9 Da
IEP (calculated)
6.776
GRAVY (calculated)
-0.021
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGLLEGIPD AVALRCLAHV PLHHHPNLEL VSRSWRSAIR SDELFKVRIE EKSSESLLCV CAFDPENTWQ VYSPSCNRWL TLPLLPSRIR HLAHFGAVTA
101: AGKLFVLGGG SDAVDPLTGD HDGTFATDEV WCYDFVKRRW TQRASMLVPR SMFACCVLDG KIVVAGGFTT CRKSISGAEM YDPESDVWAS IPDLHRTHNS
201: ACSGLVVKGK VHVLHKGLSS VQVLESVKVG WAVKEYGWPQ GPMAVVEDVP YVMSHGVVYK QEEDDTWKMV ASASEFKPRI GMAMTSLSDE VLLVGGVIGP
301: DRDNWDIKPL SDVDVLSVGS DRPVWRKVAP MTKCRGTVLG CTQLTI
101: AGKLFVLGGG SDAVDPLTGD HDGTFATDEV WCYDFVKRRW TQRASMLVPR SMFACCVLDG KIVVAGGFTT CRKSISGAEM YDPESDVWAS IPDLHRTHNS
201: ACSGLVVKGK VHVLHKGLSS VQVLESVKVG WAVKEYGWPQ GPMAVVEDVP YVMSHGVVYK QEEDDTWKMV ASASEFKPRI GMAMTSLSDE VLLVGGVIGP
301: DRDNWDIKPL SDVDVLSVGS DRPVWRKVAP MTKCRGTVLG CTQLTI
001: MSGLLDGIPE AVALRCLAHV PLHLHPNLEL VSRSWRAAIR SHELFRVRKE LRSSEHLLCV CAFDPENIWQ VYSPNCDRWL TLPLLPSRIR HLAHFGAVTT
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI
Arabidopsis Description
SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.