CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95556	Soybean	cytosol	96.52	96.52
KRH32035	Soybean	cytosol	87.83	88.08
KRH71403	Soybean	cytosol	87.83	88.08
VIT_07s0151g00770.t01	Wine grape	cytosol	80.87	80.87
Solyc09g065400.1.1	Tomato	cytosol	78.26	78.26
PGSC0003DMT400049746	Potato	cytosol	77.97	77.97
PGSC0003DMT400013635	Potato	cytosol	71.59	71.59
Solyc06g008690.1.1	Tomato	cytosol	71.3	71.3
CDX82306	Canola	cytosol	70.14	69.94
Bra001739.1-P	Field mustard	cytosol	69.86	69.65
CDY22982	Canola	cytosol	69.86	69.65
AT3G63220.2	Thale cress	cytosol	70.14	68.75
Bra037535.1-P	Field mustard	cytosol	68.41	68.01
CDY18573	Canola	cytosol	67.25	66.67
CDY58259	Canola	cytosol	66.96	66.57
CDX99248	Canola	cytosol	66.67	66.09
GSMUA_Achr6P24370_001	Banana	cytosol	64.06	63.69
OQU82118	Sorghum	cytosol	62.03	61.49
Zm00001d014338_P001	Maize	cytosol	62.03	61.49
Os10t0388200-01	Rice	cytosol	61.74	61.38
TraesCS7B01G234000.1	Wheat	cytosol	58.26	60.54
TraesCS6D01G195800.1	Wheat	cytosol	61.74	60.34
TraesCS6B01G243200.1	Wheat	cytosol	61.74	60.34
TraesCS6A01G211500.1	Wheat	extracellular, golgi	48.7	54.55
KRH48153	Soybean	cytosol	23.48	22.38
KRH48156	Soybean	cytosol	23.19	22.1
KRH31463	Soybean	cytosol	24.64	22.08
KRG97442	Soybean	cytosol, nucleus, peroxisome	23.48	21.89
KRH42654	Soybean	cytosol	24.35	21.65
KRH61941	Soybean	plastid	21.74	21.37
KRH65052	Soybean	cytosol	19.71	21.25
KRH11716	Soybean	cytosol, golgi, plastid	22.9	21.24
KRH48154	Soybean	cytosol	22.32	20.92
KRH65051	Soybean	cytosol	19.71	20.73
KRH26429	Soybean	cytosol	21.74	20.6
KRH52601	Soybean	extracellular, golgi	23.77	20.55
KRH11179	Soybean	mitochondrion, plastid	24.06	20.49
KRH18847	Soybean	cytosol	28.12	20.42
KRH42190	Soybean	cytosol, plastid	28.41	20.37
KRH21075	Soybean	mitochondrion	23.77	20.25
KRG93237	Soybean	cytosol	24.93	20.09
KRH56558	Soybean	cytosol	24.93	20.09
KRH22905	Soybean	cytosol	22.61	20.05
KRH12864	Soybean	cytosol, plasma membrane	18.84	20.0
KRH58301	Soybean	cytosol	27.83	19.96
KRH58897	Soybean	cytosol	24.64	19.45
KRG93186	Soybean	cytosol	22.32	19.35
KRH42810	Soybean	cytosol	24.35	19.22
KRH16647	Soybean	cytosol, plastid	26.38	19.08
KRH53131	Soybean	cytosol	26.09	18.91
KRH62415	Soybean	cytosol	15.07	18.84
KRH57678	Soybean	cytosol	21.45	18.78
KRH24879	Soybean	cytosol	21.16	18.39
KRH36711	Soybean	cytosol	21.45	18.36
KRH06951	Soybean	cytosol	21.16	18.07
KRG94518	Soybean	mitochondrion	20.58	17.71
KRH03453	Soybean	cytosol	20.87	17.65
KRH56929	Soybean	cytosol	20.29	17.2
KRH29930	Soybean	cytosol	17.1	17.0
KRH54527	Soybean	cytosol	20.87	16.33
KRH63378	Soybean	cytosol	20.58	16.1
KRH72270	Soybean	cytosol	5.8	15.27
KRH55297	Soybean	cytosol	12.46	14.68
KRH74828	Soybean	cytosol	21.74	13.97
KRH70694	Soybean	cytosol	21.74	13.91
KRH45883	Soybean	cytosol	21.74	13.91
KRG99114	Soybean	cytosol	20.58	13.17
HORVU6Hr1G007080.1	Barley	cytosol	3.19	12.64

Protein Annotations

EntrezGene:100800954	Gene3D:2.120.10.80	MapMan:35.1	EMBL:ACUP02002048	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
EnsemblPlantsGene:GLYMA_03G156000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1JNW3	InterPro:IPR001810
InterPro:IPR015915	EnsemblPlants:KRH67237	ProteinID:KRH67237	ProteinID:KRH67237.1	ProteinID:KRH67238.1	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF29	SMART:SM00256
SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000233A333	:	:

Description

hypothetical protein

Coordinates

chr3:-:37125592..37130514

Molecular Weight (calculated)

38117.2 Da

IEP (calculated)

6.500

GRAVY (calculated)

0.059

Length

345 amino acids

Sequence
(BLAST)

001: MSGLIERLPD AVAIRCLARV PFYFHPVLEL VSRSWQAAIR SPELFKARQE VGSTEDLLCV CAFDPENLWQ LYDPMRDLWI TLPVLPSKIR HLSNFGAVST
101: AGKLFVIGGG SDAVDPLTGD QDGCFATDEV WSYDPVVRQW APRASMLVPR SMFACCVLNG KIVVAGGFTS CRKSISQAEM YDPDKDVWIP MPDLHRTHNS
201: ACSGVVIGGK VHVLHKDLST VQVLDNAGPG WTVEECVWLQ GQMAVVGDAL YVMSHGLIFK QDKEVRKVVG SASEFRKRIG FAMTGLGDDL YVIGGFIGPD
301: RWNWDIKPLS EVDVLTLGSE RPTWRQAAPM TRCHGPILGC TLLRI

Best Arabidopsis Sequence Match ( AT3G63220.1 )
(BLAST)

001: MSGLLDGIPE AVALRCLAHV PLHLHPNLEL VSRSWRAAIR SHELFRVRKE LRSSEHLLCV CAFDPENIWQ VYSPNCDRWL TLPLLPSRIR HLAHFGAVTT
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI

Arabidopsis Description

SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.