CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 1
cytosol 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014338_P001	Maize	cytosol	98.28	98.28
Os10t0388200-01	Rice	cytosol	91.09	91.35
TraesCS7B01G234000.1	Wheat	cytosol	84.2	88.25
TraesCS6D01G195800.1	Wheat	cytosol	88.79	87.54
TraesCS6B01G243200.1	Wheat	cytosol	88.51	87.25
TraesCS6A01G211500.1	Wheat	extracellular, golgi	68.68	77.6
GSMUA_Achr6P24370_001	Banana	cytosol	77.3	77.52
VIT_07s0151g00770.t01	Wine grape	cytosol	62.93	63.48
Solyc09g065400.1.1	Tomato	cytosol	62.93	63.48
PGSC0003DMT400049746	Potato	cytosol	62.93	63.48
KRH71403	Soybean	cytosol	61.49	62.21
KRH32035	Soybean	cytosol	61.49	62.21
KRH67237	Soybean	cytosol	61.49	62.03
KRG95556	Soybean	cytosol	60.63	61.16
Solyc06g008690.1.1	Tomato	cytosol	60.06	60.58
PGSC0003DMT400013635	Potato	cytosol	59.48	60.0
CDY22982	Canola	cytosol	58.33	58.67
Bra001739.1-P	Field mustard	cytosol	58.05	58.38
CDX82306	Canola	cytosol	58.05	58.38
AT3G63220.2	Thale cress	cytosol	57.18	56.53
Bra037535.1-P	Field mustard	cytosol	56.32	56.48
CDX99248	Canola	cytosol	56.32	56.32
CDY58259	Canola	cytosol	55.46	55.62
CDY18573	Canola	cytosol	55.46	55.46
EES06854	Sorghum	cytosol	25.57	23.24
EES06149	Sorghum	cytosol	21.84	21.97
OQU81371	Sorghum	mitochondrion	23.28	21.49
KXG27134	Sorghum	cytosol	16.09	20.82
EER97991	Sorghum	mitochondrion	24.71	20.77
EER90147	Sorghum	cytosol	22.41	19.85
EES05304	Sorghum	cytosol, peroxisome, plastid	25.86	19.61
KXG24326	Sorghum	cytosol	25.57	19.02
KXG29748	Sorghum	plastid	23.28	18.62
EER91632	Sorghum	plastid	23.28	18.54
KXG30756	Sorghum	cytosol	22.41	18.35
OQU83795	Sorghum	cytosol	23.28	18.16
KXG40080	Sorghum	cytosol	21.55	17.52
HORVU6Hr1G007080.1	Barley	cytosol	4.31	17.24
EER95442	Sorghum	mitochondrion	21.26	16.89
OQU91835	Sorghum	cytosol, nucleus, plastid	20.98	16.44
OQU82347	Sorghum	mitochondrion	21.84	16.1

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EntrezGene:8064636	UniProt:C5YDM0	ProteinID:EES11253.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	EnsemblPlants:OQU82118	ProteinID:OQU82118	ProteinID:OQU82118.1	PFAM:PF00646
PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF29	SMART:SM00256	SMART:SM00612	EnsemblPlantsGene:SORBI_3006G175400
SUPFAM:SSF117281	SUPFAM:SSF81383	unigene:Sbi.7112	UniParc:UPI0001A87008	RefSeq:XP_002446925.1	:

Description

hypothetical protein

Coordinates

chr6:+:53057562..53061725

Molecular Weight (calculated)

38286.8 Da

IEP (calculated)

7.114

GRAVY (calculated)

0.075

Length

348 amino acids

Sequence
(BLAST)

001: MPSTLLDGLP NEVALQCLAR VPFLFHPMLQ LVCRSWRASV CSGELLKIRN QIDATEELLC VLAFEPENMW QLYDPLRDKW ITLPVMPSQI RNIARFGVAS
101: VAGKLYVIGG GSDRVDPLTG DHDRIFASNE VWSYDPLHRV WSQRAPMLVA RAMFACCALD GKIIVAGGFT NCRKSISKAE IYDPEAGLWE PLPDLRLAHS
201: SACTGLVIKG KMHVLHKGLS TVQILEDGGS HWAVEDFSWL QGPMAMVGGE LYVLSNSCIM KQRGENFPDK MVSCASEFQS RIGFGMIGVG DNIYLVGGVI
301: GPGPRNQCIK PLSDVDILNV TSERPTWRPG SPMTHCRGSI CGCALLRI

Best Arabidopsis Sequence Match ( AT3G63220.1 )
(BLAST)

001: MSGLLDGIPE AVALRCLAHV PLHLHPNLEL VSRSWRAAIR SHELFRVRKE LRSSEHLLCV CAFDPENIWQ VYSPNCDRWL TLPLLPSRIR HLAHFGAVTT
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI

Arabidopsis Description

SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.