CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	94.59	94.81
Zm00001d033012_P001	Maize	cytosol	93.92	93.5
KXG40080	Sorghum	cytosol	72.52	75.23
CDY33755	Canola	cytosol	17.34	62.6
GSMUA_Achr1P21630_001	Banana	cytosol	52.03	61.27
GSMUA_Achr8P01380_001	Banana	cytosol	50.9	59.47
KXG30756	Sorghum	cytosol	56.53	59.06
VIT_17s0000g05920.t01	Wine grape	cytosol	55.41	55.53
Bra026838.1-P	Field mustard	nucleus	50.9	55.53
CDY62015	Canola	nucleus	51.8	55.42
CDX81631	Canola	nucleus	50.9	55.26
GSMUA_Achr8P17960_001	Banana	nucleus	51.58	55.05
Solyc04g005670.1.1	Tomato	cytosol	50.0	54.95
Solyc04g005870.1.1	Tomato	cytosol	6.53	54.72
CDY49094	Canola	nucleus	52.03	54.48
KRH63378	Soybean	cytosol	53.83	54.2
PGSC0003DMT400007346	Potato	nucleus	52.25	53.58
KRH54527	Soybean	cytosol	53.15	53.51
KXG27134	Sorghum	cytosol	32.21	53.16
CDY60836	Canola	cytosol	45.5	53.16
Solyc03g113010.1.1	Tomato	cytosol	52.7	53.06
AT1G14330.1	Thale cress	nucleus	52.48	52.83
Bra026575.1-P	Field mustard	nucleus	52.7	52.7
CDY09349	Canola	nucleus	52.48	52.48
GSMUA_Achr10P...	Banana	nucleus	51.35	52.41
CDY62176	Canola	nucleus	52.7	52.35
KRH03453	Soybean	cytosol	47.97	52.21
Bra017407.1-P	Field mustard	nucleus, plastid	51.35	51.94
CDY17425	Canola	cytosol	46.17	51.12
CDY03028	Canola	cytosol	51.58	51.0
PGSC0003DMT400046591	Potato	extracellular	52.25	50.88
CDY45190	Canola	nucleus	51.8	50.77
Bra024801.1-P	Field mustard	nucleus	51.8	50.77
GSMUA_Achr2P14920_001	Banana	mitochondrion	54.5	50.63
AT1G26930.1	Thale cress	cytosol	47.75	50.36
AT2G02870.1	Thale cress	nucleus	52.93	50.32
OQU83795	Sorghum	cytosol	50.0	49.78
KRH56929	Soybean	cytosol	45.5	49.63
Bra016297.1-P	Field mustard	cytosol	47.52	49.53
CDY46430	Canola	cytosol	47.52	49.53
CDY52764	Canola	cytosol	47.07	49.18
CDY16205	Canola	nucleus	46.85	49.17
PGSC0003DMT400059324	Potato	cytosol	52.48	48.54
CDY33754	Canola	nucleus	26.58	47.2
GSMUA_Achr4P24130_001	Banana	nucleus	53.6	46.03
GSMUA_Achr3P01570_001	Banana	golgi	49.77	45.19
KRH45883	Soybean	cytosol	54.05	44.53
KRH74828	Soybean	cytosol	53.38	44.13
KRH70694	Soybean	cytosol	53.38	43.97
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	15.54	43.67
KRG99114	Soybean	cytosol	52.93	43.6
VIT_01s0026g02080.t01	Wine grape	nucleus	52.93	43.44
OQU82347	Sorghum	mitochondrion	42.57	40.04
PGSC0003DMT400007391	Potato	cytosol	11.04	36.57
Solyc05g007220.2.1	Tomato	nucleus	49.77	34.32
EER91632	Sorghum	plastid	21.62	21.97
OQU82118	Sorghum	cytosol	16.44	20.98
KXG29748	Sorghum	plastid	20.5	20.92
EER95442	Sorghum	mitochondrion	20.5	20.78
EES06149	Sorghum	cytosol	15.77	20.23
OQU81371	Sorghum	mitochondrion	16.67	19.63
EES06854	Sorghum	cytosol	16.89	19.58
KXG24326	Sorghum	cytosol	20.5	19.44
EER97991	Sorghum	mitochondrion	18.02	19.32
EES05304	Sorghum	cytosol, peroxisome, plastid	19.14	18.52
EER90147	Sorghum	cytosol	13.96	15.78

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EntrezGene:8067541	UniProt:C5WM95	ProteinID:EER91647.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019005
GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787	GO:GO:0043161	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	ProteinID:OQU91834.1	EnsemblPlants:OQU91835	ProteinID:OQU91835	ProteinID:OQU91835.1
PFAM:PF01344	PANTHER:PTHR24413	PANTHER:PTHR24413:SF133	SMART:SM00612	EnsemblPlantsGene:SORBI_3001G254200	SUPFAM:SSF117281
unigene:Sbi.4738	UniParc:UPI0001A820B6	RefSeq:XP_002464649.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:28465427..28472547

Molecular Weight (calculated)

49239.4 Da

IEP (calculated)

6.404

GRAVY (calculated)

-0.422

Length

444 amino acids

Sequence
(BLAST)

001: MDLYDKREDM ALQDGDYCLA PRASRGGCEV DLQWADGLVE GAGRKRCALE DFEDEVQEMD EVDGGGKRSK PPSPQPHTPD IREAHAPSRR RRTVVAGGGE
101: HSGGGGDLIG EIGRDLSINC LLRLSRSEYG SVASLNHDFR SLVRGGEIYR LRRQNNIAEH WVYFSCNVLE WDAYDPYRKR WISVPKMPPD ECFMCSDKES
201: LAVGTELLVF GMAHIVFRYS VLTNSWTRGE VMNSPRCLFG SASVGEKAYV AGGTDSFGRI LSSAELYNSE THTWTPLPSM NKARKNCSGF FMDGKFYVIG
301: GVTNNNMILT CGEVYDTQSK TWSVIENMSG GLNGVSGAPP LVAVVKNQLY AADYSEKDVK KYDKQNNRWI TLGKLPERSV SMNGWGLAFR ACGERLIVIG
401: GPRTPVGGMI ELTSWIPDDK PPVWNLMDRR PSGNFVYNCA VMGC

Best Arabidopsis Sequence Match ( AT1G14330.1 )
(BLAST)

001: MVEDRTYLMS RIFSSSRLSE SKWPYMYPQP EDSSESNLIN GKRALENDVD ELRQSKSPRL MGFSIHGNEA IEEDEQEQDQ SDSNNNGNSD GDSLINDIGR
101: DNSISCLIRC SRSGYGSIAS LNRSFRSLVK TGEIYRLRRQ NQIVEHWVYF SCQLLEWVAF NPFERRWMNL PTMPSGVTFM CADKESLAVG TDLLVLGKDD
201: YSSHVIYRYS LLTNSWSSGM RMNSPRCLFG SASLGEIAIF AGGFDSFGKI SDSAEMYNSE LQTWTTLPKM NKPRKMCSGV FMDGKFYVIG GIGGNDSKVL
301: TCGEEFDLET KKWTEIPEMS PPRSREMPAA AEAPPLVAVV NNELYAADHA DMEVRKYDKE SKKWFTLGRL PERADSVNGW GLAFRACGER LIVIGGPRSS
401: GGGYIELNSW IPSSDRSPPL WTLLGRKHSS NFVYNCAVMG C

Arabidopsis Description

At1g14330/F14L17_7 [Source:UniProtKB/TrEMBL;Acc:Q9M9S9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.