Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24540.1 | EES01631 | AT2G41090.1 | 17360592 |
| AT2G24540.1 | EES09201 | AT2G41090.1 | 17360592 |
| AT2G24540.1 | EES16322 | AT2G41090.1 | 17360592 |
| AT2G24540.1 | OQU78227 | AT2G41090.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046922_P001 | Maize | cytosol | 92.88 | 94.81 |
| Zm00001d046921_P001 | Maize | cytosol | 92.11 | 91.88 |
| TraesCS5A01G544300.1 | Wheat | extracellular, plasma membrane | 64.63 | 88.81 |
| Os06t0655500-01 | Rice | cytosol | 85.5 | 87.5 |
| TraesCS7A01G496600.1 | Wheat | cytosol | 83.46 | 85.19 |
| TraesCS7D01G483900.1 | Wheat | cytosol | 82.44 | 84.6 |
| GSMUA_AchrUn_... | Banana | cytosol | 47.07 | 51.82 |
| VIT_04s0008g02380.t01 | Wine grape | cytosol, peroxisome, plastid | 39.95 | 42.43 |
| CDX76807 | Canola | cytosol | 36.13 | 38.48 |
| Bra007843.1-P | Field mustard | cytosol | 36.39 | 38.44 |
| CDY34765 | Canola | cytosol | 36.39 | 38.44 |
| KRH61941 | Soybean | plastid | 34.1 | 38.18 |
| KRH52601 | Soybean | extracellular, golgi | 38.42 | 37.84 |
| AT2G24540.1 | Thale cress | cytosol | 35.11 | 37.1 |
| EER97991 | Sorghum | mitochondrion | 35.11 | 33.33 |
| KXG29748 | Sorghum | plastid | 26.97 | 24.37 |
| OQU82118 | Sorghum | cytosol | 19.85 | 22.41 |
| EES05304 | Sorghum | cytosol, peroxisome, plastid | 24.68 | 21.13 |
| EER91632 | Sorghum | plastid | 23.16 | 20.82 |
| KXG24326 | Sorghum | cytosol | 24.17 | 20.3 |
| EES06854 | Sorghum | cytosol | 19.59 | 20.1 |
| EER95442 | Sorghum | mitochondrion | 21.12 | 18.95 |
| EES06149 | Sorghum | cytosol | 16.29 | 18.5 |
| OQU81371 | Sorghum | mitochondrion | 17.56 | 18.3 |
| KXG27134 | Sorghum | cytosol | 11.45 | 16.73 |
| KXG40080 | Sorghum | cytosol | 16.79 | 15.42 |
| KXG30756 | Sorghum | cytosol | 15.52 | 14.35 |
| OQU83795 | Sorghum | cytosol | 16.29 | 14.35 |
| OQU91835 | Sorghum | cytosol, nucleus, plastid | 15.78 | 13.96 |
| OQU82347 | Sorghum | mitochondrion | 15.27 | 12.71 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:8069363 | UniProt:C5Z777 | EnsemblPlants:EER90147 | ProteinID:EER90147 |
| ProteinID:EER90147.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009585 | GO:GO:0009605 | GO:GO:0009628 |
| GO:GO:0009987 | GO:GO:0010017 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 |
| PFAM:PF00646 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF31 | SMART:SM00612 | EnsemblPlantsGene:SORBI_3010G214200 | SUPFAM:SSF117281 |
| SUPFAM:SSF81383 | unigene:Sbi.17279 | UniParc:UPI0001A89B35 | RefSeq:XP_002438780.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr10:-:55719173..55720354
Molecular Weight (calculated)
41477.1 Da
IEP (calculated)
4.812
GRAVY (calculated)
-0.034
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFSSMSKQQ VLDTGDGEGE EVMELIPGLP EDVAEKCLLH LPFLYHRLFR TVSSTWNRFL TDAPAKPLLF PPAAAGPGAG TAATGSVSFS LPFLFAFAFD
101: PVSRRLQCQA LDPFSRRWLL LPPVPGGGAA AGSFAVVGLP RRGEIYVIGG VEEGGSDKAV TSVAVYSAAR NGWEEAASMR TPRGYMAAGE VGGRVVVAGE
201: DGEAEVFDPE AGRWSPAAPR RGAAVARYDA AAAGGKLYVT EGWAWPFERA PRGAVYDAAA DSWCEMARGM REGWTGSCAV AGGRMYIVAE YGEWRLKRYD
301: EGRDEWRMVA GSGVPPEVRR PHVVAGEVGE VAGGRRRIYV VGAGLDVAVG TVSAAAAATA APGVEEEVVE WEVVKGPGEF AGLAPCNAQV LYA
101: PVSRRLQCQA LDPFSRRWLL LPPVPGGGAA AGSFAVVGLP RRGEIYVIGG VEEGGSDKAV TSVAVYSAAR NGWEEAASMR TPRGYMAAGE VGGRVVVAGE
201: DGEAEVFDPE AGRWSPAAPR RGAAVARYDA AAAGGKLYVT EGWAWPFERA PRGAVYDAAA DSWCEMARGM REGWTGSCAV AGGRMYIVAE YGEWRLKRYD
301: EGRDEWRMVA GSGVPPEVRR PHVVAGEVGE VAGGRRRIYV VGAGLDVAVG TVSAAAAATA APGVEEEVVE WEVVKGPGEF AGLAPCNAQV LYA
001: MAEQETTSNI NTINDQAEEE TRTKSQPLIS GLPNDIAELC LLRLPYPYHA LYRSVSSSWN KTITNPRFLF SKQSLSISSP YLFVFAFNKS TARIQWQSLD
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV
Arabidopsis Description
AFRF-box protein AFR [Source:UniProtKB/Swiss-Prot;Acc:Q8LAW2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.