Factsheet for Os06t0655500-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0267900-01
Os01t0279300-01
Os01t0810300-01
Os03t0319300-01
Os05t0491000-01
Os05t0491100-01
Os07t0687200-02
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24540.1	Os01t0267900-01	AT2G41090.1	17360592
AT2G24540.1	Os01t0279300-01	AT2G41090.1	17360592
AT2G24540.1	Os01t0810300-01	AT2G41090.1	17360592
AT2G24540.1	Os03t0319300-01	AT2G41090.1	17360592
AT2G24540.1	Os05t0491000-01	AT2G41090.1	17360592
AT2G24540.1	Os05t0491100-01	AT2G41090.1	17360592
AT2G24540.1	Os07t0687200-02	AT2G41090.1	17360592
AT2G24540.1	Os12t0603800-00	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G544300.1	Wheat	extracellular, plasma membrane	64.06	86.01
EER90147	Sorghum	cytosol	87.5	85.5
Zm00001d046922_P001	Maize	cytosol	84.9	84.68
Zm00001d046921_P001	Maize	cytosol	86.2	84.01
TraesCS7A01G496600.1	Wheat	cytosol	82.81	82.6
TraesCS7D01G483900.1	Wheat	cytosol	82.03	82.25
GSMUA_AchrUn_...	Banana	cytosol	47.92	51.54
VIT_04s0008g02380.t01	Wine grape	cytosol, peroxisome, plastid	40.62	42.16
KRH61941	Soybean	plastid	35.16	38.46
KRH52601	Soybean	extracellular, golgi	39.84	38.35
CDX76807	Canola	cytosol	36.2	37.67
Bra007843.1-P	Field mustard	cytosol	36.46	37.63
CDY34765	Canola	cytosol	36.46	37.63
AT2G24540.1	Thale cress	cytosol	35.42	36.56
Os07t0153400-01	Rice	mitochondrion	34.9	33.0
Os02t0202900-00	Rice	cytosol	27.6	24.31
Os10t0388200-01	Rice	cytosol	20.31	22.48
Os03t0167800-02	Rice	cytosol	24.74	21.69
Os02t0574900-01	Rice	cytosol	25.52	21.3
Os10t0363600-01	Rice	cytosol, plastid	26.04	21.05
Os10t0409900-01	Rice	plastid	24.22	21.04
Os04t0380300-01	Rice	plastid	20.31	20.8
Os02t0504900-01	Rice	cytosol	20.31	20.26
Os02t0114600-02	Rice	cytosol	18.75	20.0
Os03t0171600-01	Rice	cytosol	16.93	15.08
Os11t0602800-01	Rice	nucleus	16.15	14.35
Os02t0748300-01	Rice	cytosol	15.36	13.85
Os04t0619300-01	Rice	cytosol, extracellular	15.62	12.61

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EntrezGene:4341715	EMBL:AK069365	ProteinID:BAD37556.1	ProteinID:BAD37573.1
ProteinID:BAF20164.1	ProteinID:BAS98935.1	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628
GO:GO:0009987	GO:GO:0010017	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
EnsemblPlantsGene:Os06g0655500	EnsemblPlants:Os06t0655500-01	PFAM:PF00646	PANTHER:PTHR24414	PANTHER:PTHR24414:SF31	UniProt:Q67W96
SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI0000426304	RefSeq:XP_015644334.1	SEG:seg	:

Description

F-box protein 319Kelch-type beta propeller domain containing protein. (Os06t0655500-01);Hypothetical conserved gene. (Os06t0655500-02)

Coordinates

chr6:-:26877125..26878985

Molecular Weight (calculated)

40818.3 Da

IEP (calculated)

4.972

GRAVY (calculated)

-0.079

Length

384 amino acids

Sequence
(BLAST)

001: MSFSSSMSKQ QVLEVAGDEV GGGGGEEVME LIPGLPEEVA EKCLLHLPFL YHRLFRTVSS TWNRFLTVSP AKFPSAAAAS VSLSLPFLFA FAFDPASRRL
101: QCQALDPFSR RWLLLPPVPG GAAAAGSFAV VGLPRRGEIY VIGGVVEGGD KAVRSVAVYS AARNGWEEAA GMGTARGYMA AGEVGGRLVV AGEDGEAEVF
201: DPEEGRWAPA AARRGAAVAR YDAAASGGKL YVTEGWAWPF ERAPRGAVYD AASDSWSEMA RGMREGWTGS CAVAGGRMYI VAEYGEWRLK RYDEPRDEWR
301: MVAGSGVPPE VRRPHVVSGE VEEVGSGGRR RIYVVGAGLD VAIGTVSPSP AIHGGDDERV DWEVVKGPAE FAGLAPCNAQ VLYA

Best Arabidopsis Sequence Match ( AT2G24540.1 )
(BLAST)

001: MAEQETTSNI NTINDQAEEE TRTKSQPLIS GLPNDIAELC LLRLPYPYHA LYRSVSSSWN KTITNPRFLF SKQSLSISSP YLFVFAFNKS TARIQWQSLD
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV

Arabidopsis Description

AFRF-box protein AFR [Source:UniProtKB/Swiss-Prot;Acc:Q8LAW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.