Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G007030.1 | Barley | cytosol | 76.67 | 79.77 |
| EES06149 | Sorghum | cytosol | 75.28 | 78.32 |
| TraesCS6A01G037900.1 | Wheat | cytosol | 76.94 | 76.31 |
| Zm00001d014986_P001 | Maize | cytosol | 74.17 | 73.55 |
| TraesCS6B01G052900.2 | Wheat | cytosol | 76.94 | 72.51 |
| TraesCS6D01G043400.1 | Wheat | cytosol | 76.67 | 72.25 |
| GSMUA_Achr4P20790_001 | Banana | extracellular | 55.0 | 52.52 |
| VIT_15s0046g02710.t01 | Wine grape | cytosol | 45.83 | 45.96 |
| KRH48153 | Soybean | cytosol | 44.17 | 43.92 |
| VIT_15s0046g02790.t01 | Wine grape | cytosol | 33.33 | 43.48 |
| KRH48154 | Soybean | cytosol | 41.67 | 40.76 |
| KRH48156 | Soybean | cytosol | 40.28 | 40.06 |
| KRH65052 | Soybean | cytosol | 35.0 | 39.38 |
| PGSC0003DMT400000478 | Potato | nucleus | 41.94 | 37.84 |
| Solyc01g094520.2.1 | Tomato | nucleus | 41.67 | 37.59 |
| KRH65051 | Soybean | cytosol | 33.89 | 37.2 |
| CDY58793 | Canola | cytosol | 36.94 | 37.05 |
| AT3G61350.2 | Thale cress | cytosol | 36.67 | 36.87 |
| CDY51562 | Canola | cytosol | 36.67 | 36.77 |
| Bra003447.1-P | Field mustard | cytosol | 36.39 | 36.49 |
| Os10t0388200-01 | Rice | cytosol | 21.39 | 22.19 |
| Os03t0167800-02 | Rice | cytosol | 26.11 | 21.46 |
| Os04t0380300-01 | Rice | plastid | 22.22 | 21.33 |
| Os02t0504900-01 | Rice | cytosol | 22.78 | 21.3 |
| Os10t0409900-01 | Rice | plastid | 26.11 | 21.27 |
| Os02t0202900-00 | Rice | cytosol | 23.33 | 19.27 |
| Os02t0574900-01 | Rice | cytosol | 24.17 | 18.91 |
| Os06t0655500-01 | Rice | cytosol | 20.0 | 18.75 |
| Os07t0153400-01 | Rice | mitochondrion | 20.83 | 18.47 |
| Os10t0363600-01 | Rice | cytosol, plastid | 23.61 | 17.89 |
| Os03t0171600-01 | Rice | cytosol | 19.17 | 16.01 |
| Os11t0602800-01 | Rice | nucleus | 18.61 | 15.51 |
| Os02t0748300-01 | Rice | cytosol | 18.33 | 15.49 |
| Os04t0619300-01 | Rice | cytosol, extracellular | 17.78 | 13.45 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:4328063 | EMBL:AK062579 | EMBL:AK073957 | ProteinID:BAF07583.1 |
| ProteinID:BAS76641.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009409 | GO:GO:0009628 | InterPro:IPR001810 | InterPro:IPR015915 |
| InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | EnsemblPlantsGene:Os02g0114600 | EnsemblPlants:Os02t0114600-02 | PFAM:PF00646 | PFAM:PF01344 |
| PFAM:PF13964 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF40 | UniProt:Q0E4K5 | SMART:SM00256 | SMART:SM00612 |
| SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI000043DF10 | RefSeq:XP_015625898.1 | RefSeq:XP_015625899.1 | RefSeq:XP_015625900.1 |
| SEG:seg | : | : | : | : | : |
Description
F-box protein 60Kelch-type beta propeller domain containing protein. (Os02t0114600-01);Kelch-type beta propeller domain containing protein. (Os02t0114600-02)
Coordinates
chr2:-:780728..785217
Molecular Weight (calculated)
40450.0 Da
IEP (calculated)
7.721
GRAVY (calculated)
-0.113
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSEIKHGGK LSCSGMDSDG PHTSLIHGLP DEIAILCLAR VPRRYHNALR CVSKRWRALL SSEEWHSCRK RNNLDEPWVY VICRSTGIKC YVLAPDPTTR
101: SLKIMQVIEP PCSSREGISI ETLDKRLFLL GGCSWLKDAN DEVFCYDASS NCWSSVAPMP TARCYFVSAA LDKKLYITGG LGLTDKSPNS WDIYDPVTNS
201: WCVHKNPMLT PDIVKFVALD GELVTVHKAA WNRMYFAGIY DPLCRTWRGT ENEIALCWSG STVVMDGTLY MLEQSLGTKL MMWQKETKEW IMLGRLSDKL
301: TRPPCELVGI GRKIYIIGRG LSIVTIDLDT VRADGFLVSS STGPLVEHDF PPERCRVISI
101: SLKIMQVIEP PCSSREGISI ETLDKRLFLL GGCSWLKDAN DEVFCYDASS NCWSSVAPMP TARCYFVSAA LDKKLYITGG LGLTDKSPNS WDIYDPVTNS
201: WCVHKNPMLT PDIVKFVALD GELVTVHKAA WNRMYFAGIY DPLCRTWRGT ENEIALCWSG STVVMDGTLY MLEQSLGTKL MMWQKETKEW IMLGRLSDKL
301: TRPPCELVGI GRKIYIIGRG LSIVTIDLDT VRADGFLVSS STGPLVEHDF PPERCRVISI
001: MACIVEDPQR AGQSNETQIA LISGVPDDIS KSCLARVPRE YHMAMKCVSR RWRDFVCSDE MCDYRNEFNL AESWIYALCR DISGGVFLHM LNPFSSRRSW
101: KRINDYPYIP MREGMGFAVL GKRLFVLGGC GWLEDATDEI YCYDAAMNTW FDVVPPLSTK RCYFACETLD GKIIAIGGLG LNPNAKRTWD IYDPLTRTCK
201: SCSDVNIVPE MEDSFVMDGR IYIRGGVGGS STAVYSASSG IWERMDDDMA SGWRGPAVVV AGDLYVLDQT FGAKLTMWCK DTRMWIHIGK LSQLVMKQPC
301: RLVSIGNSIF VIGKDCSTVV IDVENVRKNK MNGVMVCSSI PKTWDDDIDV ISCKSVAI
101: KRINDYPYIP MREGMGFAVL GKRLFVLGGC GWLEDATDEI YCYDAAMNTW FDVVPPLSTK RCYFACETLD GKIIAIGGLG LNPNAKRTWD IYDPLTRTCK
201: SCSDVNIVPE MEDSFVMDGR IYIRGGVGGS STAVYSASSG IWERMDDDMA SGWRGPAVVV AGDLYVLDQT FGAKLTMWCK DTRMWIHIGK LSQLVMKQPC
301: RLVSIGNSIF VIGKDCSTVV IDVENVRKNK MNGVMVCSSI PKTWDDDIDV ISCKSVAI
Arabidopsis Description
SKIP4F-box/kelch-repeat protein SKIP4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.