Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G037900.1 | Wheat | cytosol | 92.41 | 97.25 |
| TraesCS6B01G052900.2 | Wheat | cytosol | 96.07 | 96.07 |
| HORVU6Hr1G007030.1 | Barley | cytosol | 83.77 | 92.49 |
| Os02t0114600-02 | Rice | cytosol | 72.25 | 76.67 |
| EES06149 | Sorghum | cytosol | 68.32 | 75.43 |
| Zm00001d014986_P001 | Maize | cytosol | 67.54 | 71.07 |
| GSMUA_Achr4P20790_001 | Banana | extracellular | 53.66 | 54.38 |
| VIT_15s0046g02710.t01 | Wine grape | cytosol | 44.76 | 47.63 |
| VIT_15s0046g02790.t01 | Wine grape | cytosol | 31.41 | 43.48 |
| KRH48153 | Soybean | cytosol | 40.31 | 42.54 |
| Solyc01g094520.2.1 | Tomato | nucleus | 41.36 | 39.6 |
| PGSC0003DMT400000478 | Potato | nucleus | 41.36 | 39.6 |
| KRH48156 | Soybean | cytosol | 37.43 | 39.5 |
| KRH48154 | Soybean | cytosol | 37.96 | 39.4 |
| AT3G61350.2 | Thale cress | cytosol | 36.91 | 39.39 |
| KRH65052 | Soybean | cytosol | 32.98 | 39.38 |
| CDY58793 | Canola | cytosol | 36.13 | 38.44 |
| Bra003447.1-P | Field mustard | cytosol | 35.86 | 38.16 |
| CDY51562 | Canola | cytosol | 35.86 | 38.16 |
| KRH65051 | Soybean | cytosol | 30.37 | 35.37 |
| TraesCS6D01G195800.1 | Wheat | cytosol | 22.25 | 24.08 |
| TraesCS2D01G279700.1 | Wheat | mitochondrion | 21.47 | 21.41 |
| TraesCS4D01G282200.1 | Wheat | cytosol | 23.3 | 21.34 |
| TraesCS4D01G286700.1 | Wheat | cytosol | 18.32 | 21.21 |
| TraesCS6D01G167900.1 | Wheat | plastid | 23.04 | 20.8 |
| TraesCS3D01G439000.1 | Wheat | cytosol | 20.68 | 20.57 |
| TraesCS3D01G540000.1 | Wheat | cytosol | 22.51 | 20.14 |
| TraesCS1D01G136700.1 | Wheat | nucleus | 24.61 | 20.13 |
| TraesCS2D01G499800.1 | Wheat | mitochondrion | 20.94 | 19.75 |
| TraesCS7D01G016400.1 | Wheat | cytosol, plastid | 22.77 | 19.08 |
| TraesCS7D01G005100.1 | Wheat | cytosol | 10.47 | 18.6 |
| TraesCS7D01G483900.1 | Wheat | cytosol | 18.32 | 18.28 |
| TraesCS6D01G285100.1 | Wheat | cytosol, nucleus, plastid | 18.59 | 16.71 |
| TraesCS7D01G007100.1 | Wheat | cytosol | 15.71 | 16.13 |
| TraesCS2D01G463000.1 | Wheat | cytosol | 17.02 | 14.54 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009409 | GO:GO:0009628 | InterPro:IPR001810 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 | PANTHER:PTHR24414 |
| PANTHER:PTHR24414:SF40 | SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | EnsemblPlantsGene:TraesCS6D01G043400 |
| EnsemblPlants:TraesCS6D01G043400.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:18007565..18008818
Molecular Weight (calculated)
43247.4 Da
IEP (calculated)
6.942
GRAVY (calculated)
-0.095
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MASIRTAVPF SPTLFCVTRM NHHLQSSDYQ KLFCRRMDSA ELQTPLLHGL PDEIALLCLA RVPRQYHNAL RCVSRGWKAL LCSEEWHSYR MRNNLDESWI
101: YVICRGTGFK CYVLVPDPMT RCLKVIQVME PPCSGREGVS IETLDRRLFL MGGCSWLKDA TDEVYCYDAA SNHWSKAAPM PTARCFFVSA ALNDKIYVTG
201: GLGLTDKSPN SWDIYDKATD SWFSHKNPML TPDIVKFVAL DDELVTIHKA SWNRMYFAGI YDPVDQSWRG KENEIALCWS GPTVVVDGTL YMLDQSLGTK
301: LMMWLNETKE WVMVGRLSDK LTRPPCELVA IGRKIYVIGK GLSTVTIDMD MAARVDGFLV SSSTGPLMEH DFSPEKCSVI TI
101: YVICRGTGFK CYVLVPDPMT RCLKVIQVME PPCSGREGVS IETLDRRLFL MGGCSWLKDA TDEVYCYDAA SNHWSKAAPM PTARCFFVSA ALNDKIYVTG
201: GLGLTDKSPN SWDIYDKATD SWFSHKNPML TPDIVKFVAL DDELVTIHKA SWNRMYFAGI YDPVDQSWRG KENEIALCWS GPTVVVDGTL YMLDQSLGTK
301: LMMWLNETKE WVMVGRLSDK LTRPPCELVA IGRKIYVIGK GLSTVTIDMD MAARVDGFLV SSSTGPLMEH DFSPEKCSVI TI
001: MACIVEDPQR AGQSNETQIA LISGVPDDIS KSCLARVPRE YHMAMKCVSR RWRDFVCSDE MCDYRNEFNL AESWIYALCR DISGGVFLHM LNPFSSRRSW
101: KRINDYPYIP MREGMGFAVL GKRLFVLGGC GWLEDATDEI YCYDAAMNTW FDVVPPLSTK RCYFACETLD GKIIAIGGLG LNPNAKRTWD IYDPLTRTCK
201: SCSDVNIVPE MEDSFVMDGR IYIRGGVGGS STAVYSASSG IWERMDDDMA SGWRGPAVVV AGDLYVLDQT FGAKLTMWCK DTRMWIHIGK LSQLVMKQPC
301: RLVSIGNSIF VIGKDCSTVV IDVENVRKNK MNGVMVCSSI PKTWDDDIDV ISCKSVAI
101: KRINDYPYIP MREGMGFAVL GKRLFVLGGC GWLEDATDEI YCYDAAMNTW FDVVPPLSTK RCYFACETLD GKIIAIGGLG LNPNAKRTWD IYDPLTRTCK
201: SCSDVNIVPE MEDSFVMDGR IYIRGGVGGS STAVYSASSG IWERMDDDMA SGWRGPAVVV AGDLYVLDQT FGAKLTMWCK DTRMWIHIGK LSQLVMKQPC
301: RLVSIGNSIF VIGKDCSTVV IDVENVRKNK MNGVMVCSSI PKTWDDDIDV ISCKSVAI
Arabidopsis Description
SKIP4F-box/kelch-repeat protein SKIP4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.