Factsheet for TraesCS6D01G167900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G175700.1	Wheat	plastid	98.11	98.11
TraesCS6B01G209700.1	Wheat	cytosol	95.98	95.98
HORVU6Hr1G037850.2	Barley	plastid	94.56	93.9
Os02t0202900-00	Rice	cytosol	78.25	75.92
Zm00001d015744_P001	Maize	plastid	73.52	74.4
KXG29748	Sorghum	plastid	76.12	74.02
GSMUA_Achr7P08330_001	Banana	cytosol	55.08	59.14
GSMUA_Achr2P17100_001	Banana	cytosol, plastid	54.37	56.37
TraesCS4D01G282200.1	Wheat	cytosol	49.17	49.88
TraesCS3D01G540000.1	Wheat	cytosol	49.88	49.41
TraesCS1D01G136700.1	Wheat	nucleus	52.01	47.11
TraesCS2D01G499800.1	Wheat	mitochondrion	28.61	29.88
TraesCS7D01G483900.1	Wheat	cytosol	24.82	27.42
TraesCS7D01G016400.1	Wheat	cytosol, plastid	27.19	25.22
TraesCS4D01G286700.1	Wheat	cytosol	19.39	24.85
TraesCS2D01G279700.1	Wheat	mitochondrion	21.99	24.28
TraesCS3D01G439000.1	Wheat	cytosol	21.28	23.44
TraesCS6D01G043400.1	Wheat	cytosol	20.8	23.04
TraesCS6D01G195800.1	Wheat	cytosol	18.68	22.38
TraesCS7D01G005100.1	Wheat	cytosol	10.17	20.0
TraesCS7D01G007100.1	Wheat	cytosol	17.02	19.35
TraesCS6D01G285100.1	Wheat	cytosol, nucleus, plastid	19.15	19.06
TraesCS2D01G463000.1	Wheat	cytosol	19.62	18.57

Protein Annotations

EnsemblPlants:TraesCS6D01G167900.1	EnsemblPlantsGene:TraesCS6D01G167900	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
PANTHER:PTHR24412	PANTHER:PTHR24412:SF234	PFAM:PF00646	PFAM:PF01344	SEG:seg	SMART:SM00612
SUPFAM:SSF117281	SUPFAM:SSF81383	MapMan:9.2.1.1.3	:	:	:

Description

No Description!

Coordinates

chr6D:+:151955370..151958341

Molecular Weight (calculated)

46036.4 Da

IEP (calculated)

10.179

GRAVY (calculated)

-0.147

Length

423 amino acids

Sequence
(BLAST)

001: MDRRIQAPLV DSSACLCRAE RAAAVASTGR HVPRSRPCVQ SSVRASIHPL SEKRSSRADR RSDGQRPLLP GLPDDLAIAC LIRVPRADHC KLRLVCRRWL
101: RLLAGNYFYG LRGRLGLAEQ WLYAFKSDGD GRVSWDVLDP AAAAWRAMPP VPAEYAAAAG FSCAVLGGCH LYLLGGRDPR RGAMRRVVFY SARSNRWHRA
201: PDMLRRRHCF GACVMGNRLY VAGGESGGGS LRSAEVFDPA KNRWSFVSDM ARALVPFVSV VHSGRWYVKG LGAGRQVLSQ VYTPETDKWS TVATLDSMVT
301: GWRSPSACID GRLYAADCKD GCRLRAYDEA ADAWSGCASS GHHLGSSHAL EAVAMVTLRG KLCVVRNDMS VSVVDVAAGA GNQPWETLVG KGQIKSFVTN
401: LLASIAGRGR AKNRVLHCQV LEA

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.