Factsheet for TraesCS2D01G499800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G499700.1	Wheat	cytosol, mitochondrion	93.58	95.23
Os07t0153400-01	Rice	mitochondrion	83.46	83.25
EER97991	Sorghum	mitochondrion	81.98	80.19
Zm00001d018813_P001	Maize	mitochondrion	80.25	79.27
GSMUA_Achr6P31190_001	Banana	mitochondrion	71.36	70.32
PGSC0003DMT400008228	Potato	cytosol, mitochondrion, peroxisome, plastid	60.25	60.7
Solyc02g021600.1.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	60.0	60.45
KRH21075	Soybean	mitochondrion	59.75	59.75
KRH11179	Soybean	mitochondrion, plastid	59.51	59.51
CDY26295	Canola	mitochondrion, plastid	56.3	57.29
CDX99882	Canola	mitochondrion, plastid	56.05	57.04
VIT_10s0003g03730.t01	Wine grape	cytosol	32.35	56.96
Bra032358.1-P	Field mustard	mitochondrion, plastid	55.8	56.78
AT1G30090.1	Thale cress	mitochondrion, plastid	55.8	56.78
TraesCS7D01G483900.1	Wheat	cytosol	33.33	35.25
TraesCS6D01G167900.1	Wheat	plastid	29.88	28.61
TraesCS7D01G016400.1	Wheat	cytosol, plastid	26.91	23.9
TraesCS4D01G282200.1	Wheat	cytosol	24.2	23.5
TraesCS6D01G195800.1	Wheat	cytosol	20.25	23.23
TraesCS3D01G540000.1	Wheat	cytosol	24.44	23.18
TraesCS4D01G286700.1	Wheat	cytosol	18.77	23.03
TraesCS2D01G279700.1	Wheat	mitochondrion	21.23	22.45
TraesCS1D01G136700.1	Wheat	nucleus	25.19	21.84
TraesCS3D01G439000.1	Wheat	cytosol	20.49	21.61
TraesCS6D01G043400.1	Wheat	cytosol	19.75	20.94
TraesCS7D01G005100.1	Wheat	cytosol	10.62	20.0
TraesCS7D01G007100.1	Wheat	cytosol	17.53	19.09
TraesCS6D01G285100.1	Wheat	cytosol, nucleus, plastid	18.52	17.65
TraesCS2D01G463000.1	Wheat	cytosol	17.28	15.66

Protein Annotations

EnsemblPlants:TraesCS2D01G499800.1	EnsemblPlantsGene:TraesCS2D01G499800	Gene3D:1.20.1280.50	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1	PANTHER:PTHR24411	PANTHER:PTHR24411:SF27	PFAM:PF00646	PFAM:PF01344	SEG:seg
SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	MapMan:35.1	:

Description

No Description!

Coordinates

chr2D:-:594551711..594552928

Molecular Weight (calculated)

44745.0 Da

IEP (calculated)

8.546

GRAVY (calculated)

-0.170

Length

405 amino acids

Sequence
(BLAST)

001: MRRVRVSSHH SPVQKLGDSH MKLTPKFRLT AGTTSSPSSQ PEQSQPPWET PLIPGLPDDA ALNCLLRLPV EAHGACRLVC RRWRHLLADK ARFFTHRRAM
101: GLRSPWLFTL AFHRCTGKIQ WKVLDLDRLA WHAIPGMPCR DRACPRGFGC IAVPGDGALL VCGGLVSDMD CPLHLVLRYD VYKNRWTVMA RMLSARSFFA
201: GGVIDGRVYV AGGYSTDQFE LDSAEVLDPV NGVWQPVASM GANMASSDSA VIGGRLYVTE GCAWPFFSSP RGQVYDPKAD RWEAMPAGMR EGWTGQSVVI
301: DGRLFVISEY ERMKVKVYDP ETDSWDPVDG PPMPERIMKP LSVSCLESKI VVVGRGLHVV IGHVKKQSAG NGGGGSCDYL VRWQDVEVPR AFSDLTPSSS
401: QILHA

Best Arabidopsis Sequence Match ( AT1G30090.1 )
(BLAST)

001: MQRVRVSSQR AVVHKLGDSQ MTLSPKFRVA ASIQSTLFDR SSELELSLRG EPLIPGLPDD VALNCLLRVP VQSHVSSKSV CKRWHLLFGT KETFFAKRKE
101: FGFKDPWLFV VGFSRCTGKI QWKVLDLRNL TWHEIPAMPC RDKVCPHGFR SVSMPREGTM FVCGGMVSDS DCPLDLVLKY DMVKNHWTVT NKMITARSFF
201: ASGVIDGMIY AAGGNAADLY ELDCAEVLNP LDGNWRPVSN MVAHMASYDT AVLNGKLLVT EGWLWPFFVS PRGQVYDPRT DQWETMSMGL REGWTGTSVV
301: IYDRLFIVSE LERMKMKVYD PVTDSWETIN GPELPEQICR PFAVNCYGNR VYVVGRNLHL AVGNIWQSEN KFAVRWEVVE SPERYADITP SNSQILFA

Arabidopsis Description

F-box/kelch-repeat protein At1g30090 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z0]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.