Factsheet for VIT_10s0003g03730.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21075	Soybean	mitochondrion	76.09	43.21
KRH11179	Soybean	mitochondrion, plastid	74.78	42.47
PGSC0003DMT400008228	Potato	cytosol, mitochondrion, peroxisome, plastid	70.0	40.05
Solyc02g021600.1.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	68.26	39.05
CDX99882	Canola	mitochondrion, plastid	63.91	36.93
Bra032358.1-P	Field mustard	mitochondrion, plastid	63.48	36.68
CDY26295	Canola	mitochondrion, plastid	63.48	36.68
AT1G30090.1	Thale cress	mitochondrion, plastid	62.61	36.18
GSMUA_Achr6P31190_001	Banana	mitochondrion	60.43	33.82
Zm00001d018813_P001	Maize	mitochondrion	58.26	32.68
TraesCS2A01G499700.1	Wheat	cytosol, mitochondrion	56.52	32.66
TraesCS2D01G499800.1	Wheat	mitochondrion	56.96	32.35
Os07t0153400-01	Rice	mitochondrion	56.52	32.02
EER97991	Sorghum	mitochondrion	57.39	31.88
VIT_04s0008g02380.t01	Wine grape	cytosol, peroxisome, plastid	40.43	25.14
VIT_12s0055g00910.t01	Wine grape	cytosol	27.39	13.15
VIT_07s0151g00770.t01	Wine grape	cytosol	19.57	13.04
VIT_18s0001g04730.t01	Wine grape	cytosol, plastid	26.96	13.0
VIT_15s0046g02710.t01	Wine grape	cytosol	20.0	12.81
VIT_11s0016g05050.t01	Wine grape	cytosol	22.61	12.15
VIT_06s0004g00860.t01	Wine grape	cytosol	23.04	12.13
VIT_01s0010g03320.t01	Wine grape	cytosol	19.57	11.69
VIT_15s0046g02790.t01	Wine grape	cytosol	13.91	11.59
VIT_06s0004g02980.t01	Wine grape	cytosol	17.39	10.99
VIT_16s0039g01470.t01	Wine grape	cytosol	15.22	9.11
VIT_17s0000g05920.t01	Wine grape	cytosol	15.65	8.13
VIT_14s0068g02150.t01	Wine grape	cytosol	15.22	7.34
VIT_01s0026g02080.t01	Wine grape	nucleus	16.52	7.02

Protein Annotations

EntrezGene:100265306	wikigene:100265306	Gene3D:2.120.10.80	MapMan:35.1	EMBL:AM473984	ProteinID:CAN75078
ProteinID:CAN75078.1	ProteinID:CCB55803	ProteinID:CCB55803.1	UniProt:F6HLS9	EMBL:FN595992	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	EntrezGene:LOC100265306
wikigene:LOC100265306	PFAM:PF01344	PANTHER:PTHR24411	PANTHER:PTHR24411:SF27	SMART:SM00612	SUPFAM:SSF117281
UniParc:UPI000210934E	ArrayExpress:VIT_10s0003g03730	EnsemblPlantsGene:VIT_10s0003g03730	EnsemblPlants:VIT_10s0003g03730.t01	unigene:Vvi.22946	RefSeq:XP_002277472
RefSeq:XP_002277472.1	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:6334108..6336566

Molecular Weight (calculated)

25664.6 Da

IEP (calculated)

5.292

GRAVY (calculated)

-0.070

Length

230 amino acids

Sequence
(BLAST)

001: MSQMITARSF FATGVIDGMI YAAGGNSSDL FELDLAEVLD PVKGIWSPIA SMGTNMASYD AAVLNGKLLV TEGWLWPFFV SPRGQVYDPR TNNWENMAAG
101: LREGWTGSSV VVYGHLFVVS EHERMKLKVY DMESDNWETV EGPALPEQIC KPFSVNACDC KIYVVGRNLH VAVGHIWRLN QKGNCEKNWS FGVRWHVVDA
201: PEAFADLTPS SSQVCRTIGR FSIYQREVTV

Best Arabidopsis Sequence Match ( AT1G30090.1 )
(BLAST)

001: MQRVRVSSQR AVVHKLGDSQ MTLSPKFRVA ASIQSTLFDR SSELELSLRG EPLIPGLPDD VALNCLLRVP VQSHVSSKSV CKRWHLLFGT KETFFAKRKE
101: FGFKDPWLFV VGFSRCTGKI QWKVLDLRNL TWHEIPAMPC RDKVCPHGFR SVSMPREGTM FVCGGMVSDS DCPLDLVLKY DMVKNHWTVT NKMITARSFF
201: ASGVIDGMIY AAGGNAADLY ELDCAEVLNP LDGNWRPVSN MVAHMASYDT AVLNGKLLVT EGWLWPFFVS PRGQVYDPRT DQWETMSMGL REGWTGTSVV
301: IYDRLFIVSE LERMKMKVYD PVTDSWETIN GPELPEQICR PFAVNCYGNR VYVVGRNLHL AVGNIWQSEN KFAVRWEVVE SPERYADITP SNSQILFA

Arabidopsis Description

F-box/kelch-repeat protein At1g30090 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z0]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.