Factsheet for VIT_06s0004g02980.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069320.1.1	Tomato	plastid	52.47	87.61
KRH26429	Soybean	cytosol	77.2	77.2
PGSC0003DMT400020936	Potato	cytosol	79.4	74.48
KRH22905	Soybean	cytosol	77.2	72.24
KRH29930	Soybean	cytosol	68.41	71.76
KRH24879	Soybean	cytosol	77.2	70.78
Bra002471.1-P	Field mustard	cytosol	70.88	68.8
CDY31534	Canola	cytosol	70.88	68.8
CDX80156	Canola	cytosol	70.6	67.81
AT5G60570.2	Thale cress	cytosol	72.25	66.92
KRH12864	Soybean	cytosol, plasma membrane	59.07	66.15
VIT_16s0039g01470.t01	Wine grape	cytosol	63.46	60.16
VIT_17s0000g05920.t01	Wine grape	cytosol	51.65	42.44
VIT_01s0026g02080.t01	Wine grape	nucleus	51.37	34.57
VIT_14s0068g02150.t01	Wine grape	cytosol	36.81	28.09
VIT_07s0151g00770.t01	Wine grape	cytosol	19.78	20.87
VIT_06s0004g00860.t01	Wine grape	cytosol	24.45	20.37
VIT_01s0010g03320.t01	Wine grape	cytosol	21.43	20.26
VIT_11s0016g05050.t01	Wine grape	cytosol	23.63	20.09
VIT_15s0046g02790.t01	Wine grape	cytosol	14.84	19.57
VIT_04s0008g02380.t01	Wine grape	cytosol, peroxisome, plastid	19.23	18.92
VIT_15s0046g02710.t01	Wine grape	cytosol	18.13	18.38
VIT_10s0003g03730.t01	Wine grape	cytosol	10.99	17.39
VIT_18s0001g04730.t01	Wine grape	cytosol, plastid	21.98	16.77
VIT_12s0055g00910.t01	Wine grape	cytosol	21.43	16.28

Protein Annotations

EntrezGene:100255357	wikigene:100255357	Gene3D:2.120.10.80	MapMan:35.1	ProteinID:CBI16301	ProteinID:CBI16301.3
UniProt:D7SKX3	EMBL:FN594951	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162
GO:GO:0031625	GO:GO:0042787	GO:GO:0043161	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
EntrezGene:LOC100255357	wikigene:LOC100255357	PFAM:PF01344	PANTHER:PTHR24413	PANTHER:PTHR24413:SF169	SMART:SM00612
SUPFAM:SSF117281	TIGR:TC53929	TIGR:TC59383	UniParc:UPI0001BE1031	ArrayExpress:VIT_06s0004g02980	EnsemblPlantsGene:VIT_06s0004g02980
EnsemblPlants:VIT_06s0004g02980.t01	unigene:Vvi.1141	unigene:Vvi.22761	RefSeq:XP_002282284	RefSeq:XP_002282284.2	:

Description

No Description!

Coordinates

chr6:-:3710645..3712337

Molecular Weight (calculated)

40529.0 Da

IEP (calculated)

8.264

GRAVY (calculated)

-0.168

Length

364 amino acids

Sequence
(BLAST)

001: MRSKRRVYDG CGQIETNGSL LPGLCDDVAL KCLALACRSD YASLSCLNTR FNKLIKSGNL YGERKVLGIA EHWVYLVCDL RGWEAFDAMR KKWMKLPKIP
101: CDECFNHADK ESLAVGSELL VFGREFYDFA IWKYSLVRGN WIKCQGMNLP RCLFGSSSLG SIAIVAGGSD KSGNVLKSAE LYDSSSGRWE MLPNMHSPRR
201: LCSGFFMDGK FYVIGGMTSP TDSLTCGEEF DLKTREWRKI EGMYPNVNRA AQAPPLVAVV DNQLYAVEYL TNMVKKYDKE KNTWDVLGRL PVRADLSNGW
301: GLAFKACGEQ LLVVGGQRGP EGEAVVLNSW HPKSGVKDGT LDWKVIGVKE HVGVFVYNCA VMGC

Best Arabidopsis Sequence Match ( AT5G60570.2 )
(BLAST)

001: MAAEEHSNKR REVSASASAS ASASVVVNLR VGEEDNDGHR LRLGSSDSVL PGLIDDVALN CLAWVPRSDY PSLSCVNKKY NKLINSGHLF ALRKELGIVE
101: YLVFMVCDPR GWLMFSPMKK KWMVLPKMPC DECFNHADKE SLAVDDELLV FGRELFQFAI WKYSLRSRCW VKCEGMHRPR CLFASGSLGG IAIVAGGTDM
201: NGNILASAEL YDSSSGRWEM LPNMHSPRRL CSGFFMDGKF YVIGGMSSPN VSVTFGEEFD LETRKWRKIE GMYPNVNRAA QAPPLVVVVN NELFTLEYST
301: NMVKKYDKVK NKWEVMGRLP PMVDSSNGWG LAFKPCGDQL LVFCGQRGPH GEGIVVNSWC PKSGAKDGNL DWKVLGVKEN VGVFVYNCAV MGC

Arabidopsis Description

F-box/kelch-repeat protein At5g60570 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.