Factsheet for VIT_11s0016g05050.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93237	Soybean	cytosol	91.12	91.12
KRH56558	Soybean	cytosol	90.89	90.89
KRG93186	Soybean	cytosol	79.21	85.18
VIT_06s0004g00860.t01	Wine grape	cytosol	79.21	77.57
VIT_15s0046g02790.t01	Wine grape	cytosol	18.22	28.26
VIT_01s0010g03320.t01	Wine grape	cytosol	23.6	26.23
VIT_15s0046g02710.t01	Wine grape	cytosol	21.73	25.91
VIT_18s0001g04730.t01	Wine grape	cytosol, plastid	28.74	25.79
VIT_12s0055g00910.t01	Wine grape	cytosol	28.04	25.05
VIT_07s0151g00770.t01	Wine grape	cytosol	19.63	24.35
VIT_04s0008g02380.t01	Wine grape	cytosol, peroxisome, plastid	21.03	24.32
VIT_16s0039g01470.t01	Wine grape	cytosol	21.26	23.7
VIT_06s0004g02980.t01	Wine grape	cytosol	20.09	23.63
VIT_10s0003g03730.t01	Wine grape	cytosol	12.15	22.61
VIT_17s0000g05920.t01	Wine grape	cytosol	20.09	19.41
VIT_14s0068g02150.t01	Wine grape	cytosol	19.39	17.4
VIT_01s0026g02080.t01	Wine grape	nucleus	20.09	15.9

Protein Annotations

EntrezGene:100243988	wikigene:100243988	Gene3D:2.120.10.80	MapMan:9.2.1.1.3	EMBL:AM459740	ProteinID:CAN63498
ProteinID:CAN63498.1	ProteinID:CCB51573	ProteinID:CCB51573.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6HH77
EMBL:FN595756	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031463	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	EntrezGene:LOC100243988	wikigene:LOC100243988	PFAM:PF00646
PFAM:PF01344	PANTHER:PTHR24412	PANTHER:PTHR24412:SF234	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI00015C8C5B	ArrayExpress:VIT_11s0016g05050	EnsemblPlantsGene:VIT_11s0016g05050	EnsemblPlants:VIT_11s0016g05050.t01	unigene:Vvi.2608	RefSeq:XP_002281929
RefSeq:XP_002281929.1	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:4345840..4350117

Molecular Weight (calculated)

48494.8 Da

IEP (calculated)

9.730

GRAVY (calculated)

-0.286

Length

428 amino acids

Sequence
(BLAST)

001: MDRVIQPPLV DTTACLCRVD AGLKTVAGAK KFVPGTKLCL QPDIKPSIHP TRHKPSRGDR SRSQSPLLPG LPDDLAIACL IRVPRIEHRK LRLVCKRWYR
101: LLVGNFYYSL RKNLGIAEEW IYVIKRDREG KISWHAFDPI YQLWQPLPPV PKEYSEALGF GCAVLSGCHL YLFGGKDPLK GSMRRVIFYS ARTNKWHRAP
201: DMLRRRHFFG SCVINNCLYV AGGENEGMHR SLRSAEVYDP NRNRWSFISD MSTAMVPFIG VVYEGKWFLK GLGSHRQVLS EVYQPETDSW YPVYDGMVAG
301: WRNPSASLNG QLYALDCKDG CKLRVYDEVS DSWSKHIDSK MHLGNSQALE AAALVPLHGK LCIIRNNMSI SLVNVSKSED MTGPTAEHLW ETIAGRGQFK
401: TLVTNLWSSL AGRNRLKSHI VHCQVLQA

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.