Factsheet for VIT_15s0046g02710.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0046g02790.t01	Wine grape	cytosol	74.09	96.38
KRH48153	Soybean	cytosol	65.18	64.64
KRH48154	Soybean	cytosol	60.72	59.24
KRH65052	Soybean	cytosol	52.37	58.75
KRH48156	Soybean	cytosol	59.05	58.56
PGSC0003DMT400000478	Potato	nucleus	64.62	58.15
Solyc01g094520.2.1	Tomato	nucleus	64.35	57.89
KRH65051	Soybean	cytosol	51.81	56.71
AT3G61350.2	Thale cress	cytosol	54.6	54.75
CDY58793	Canola	cytosol	52.37	52.37
CDY51562	Canola	cytosol	51.53	51.53
Bra003447.1-P	Field mustard	cytosol	51.25	51.25
HORVU6Hr1G007030.1	Barley	cytosol	46.8	48.55
TraesCS6A01G037900.1	Wheat	cytosol	48.19	47.66
EES06149	Sorghum	cytosol	44.85	46.53
GSMUA_Achr4P20790_001	Banana	extracellular	48.75	46.42
Os02t0114600-02	Rice	cytosol	45.96	45.83
TraesCS6D01G043400.1	Wheat	cytosol	47.63	44.76
TraesCS6B01G052900.2	Wheat	cytosol	47.08	44.24
Zm00001d014986_P001	Maize	cytosol	44.29	43.8
VIT_07s0151g00770.t01	Wine grape	cytosol	24.51	25.51
VIT_04s0008g02380.t01	Wine grape	cytosol, peroxisome, plastid	25.07	24.32
VIT_11s0016g05050.t01	Wine grape	cytosol	25.91	21.73
VIT_01s0010g03320.t01	Wine grape	cytosol	22.84	21.3
VIT_06s0004g00860.t01	Wine grape	cytosol	25.91	21.28
VIT_10s0003g03730.t01	Wine grape	cytosol	12.81	20.0
VIT_12s0055g00910.t01	Wine grape	cytosol	25.35	19.0
VIT_18s0001g04730.t01	Wine grape	cytosol, plastid	25.07	18.87
VIT_16s0039g01470.t01	Wine grape	cytosol	19.5	18.23
VIT_06s0004g02980.t01	Wine grape	cytosol	18.38	18.13
VIT_17s0000g05920.t01	Wine grape	cytosol	22.01	17.83
VIT_01s0026g02080.t01	Wine grape	nucleus	21.73	14.42
VIT_14s0068g02150.t01	Wine grape	cytosol	17.27	13.0

Protein Annotations

EntrezGene:100253406	wikigene:100253406	EntrezGene:100260161	wikigene:100260161	Gene3D:2.120.10.80	MapMan:35.1
ProteinID:CBI40360	ProteinID:CBI40360.3	UniProt:D7UC95	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EMBL:FN596755
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1	EntrezGene:LOC100253406	wikigene:LOC100253406	EntrezGene:LOC100260161	wikigene:LOC100260161	PFAM:PF00646
PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF40	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI00015CAA1F	ArrayExpress:VIT_15s0046g02710	EnsemblPlantsGene:VIT_15s0046g02710	EnsemblPlants:VIT_15s0046g02710.t01	unigene:Vvi.19589
RefSeq:XP_002274480	RefSeq:XP_002274480.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr15:+:19448799..19450153

Molecular Weight (calculated)

40295.6 Da

IEP (calculated)

7.393

GRAVY (calculated)

-0.115

Length

359 amino acids

Sequence
(BLAST)

001: MELLESELEG ISRIELAQSP LICGLPDDIA LICLARVPRK YHTLLKCVSR RWRDLVSSEE WHAYRQKHKL DEPWIYALCR DKFERVCCYV LDPYSTRRSW
101: KLIEGFPPRS LKRKGMSFEV LGKKVYLLGG CGWLEDATDE VYSYDASTNR WSEAAPLSTA RCYFACEVLN GKIYAIGGLG SKSNDPHSWD TYNPHTNSWK
201: SHLDPNIVPD IEDSIVLDEK IYIRCGTSGL TSHVYAVVYN PSHGTWQHAD ADMVLGWQGP AVVVDGTLYV LDQRLGTRLM MWQKESRKWV AVGRLSPLLT
301: CPPCRLVAIG KSIFVIGKGL STVVFDIGNV GNMGGVMVSS SIPKLTSDDD VISCKILAI

Best Arabidopsis Sequence Match ( AT3G61350.1 )
(BLAST)

001: MACIVEDPQR AGQSNETQIA LISGVPDDIS KSCLARVPRE YHMAMKCVSR RWRDFVCSDE MCDYRNEFNL AESWIYALCR DISGGVFLHM LNPFSSRRSW
101: KRINDYPYIP MREGMGFAVL GKRLFVLGGC GWLEDATDEI YCYDAAMNTW FDVVPPLSTK RCYFACETLD GKIIAIGGLG LNPNAKRTWD IYDPLTRTCK
201: SCSDVNIVPE MEDSFVMDGR IYIRGGVGGS STAVYSASSG IWERMDDDMA SGWRGPAVVV AGDLYVLDQT FGAKLTMWCK DTRMWIHIGK LSQLVMKQPC
301: RLVSIGNSIF VIGKDCSTVV IDVENVRKNK MNGVMVCSSI PKTWDDDIDV ISCKSVAI

Arabidopsis Description

SKIP4F-box/kelch-repeat protein SKIP4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.