Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58793 | Canola | cytosol | 73.18 | 72.98 |
| CDY51562 | Canola | cytosol | 72.35 | 72.14 |
| Bra003447.1-P | Field mustard | cytosol | 71.51 | 71.31 |
| VIT_15s0046g02710.t01 | Wine grape | cytosol | 54.75 | 54.6 |
| VIT_15s0046g02790.t01 | Wine grape | cytosol | 39.66 | 51.45 |
| KRH48153 | Soybean | cytosol | 49.72 | 49.17 |
| KRH48154 | Soybean | cytosol | 48.6 | 47.28 |
| Solyc01g094520.2.1 | Tomato | nucleus | 50.28 | 45.11 |
| PGSC0003DMT400000478 | Potato | nucleus | 50.28 | 45.11 |
| KRH48156 | Soybean | cytosol | 45.25 | 44.75 |
| KRH65051 | Soybean | cytosol | 40.5 | 44.21 |
| KRH65052 | Soybean | cytosol | 39.11 | 43.75 |
| HORVU6Hr1G007030.1 | Barley | cytosol | 37.43 | 38.73 |
| TraesCS6A01G037900.1 | Wheat | cytosol | 38.83 | 38.29 |
| TraesCS6D01G043400.1 | Wheat | cytosol | 39.39 | 36.91 |
| Os02t0114600-02 | Rice | cytosol | 36.87 | 36.67 |
| TraesCS6B01G052900.2 | Wheat | cytosol | 39.11 | 36.65 |
| GSMUA_Achr4P20790_001 | Banana | extracellular | 38.55 | 36.6 |
| EES06149 | Sorghum | cytosol | 35.2 | 36.42 |
| Zm00001d014986_P001 | Maize | cytosol | 33.8 | 33.33 |
| AT3G63220.2 | Thale cress | cytosol | 21.23 | 21.59 |
| AT2G24540.1 | Thale cress | cytosol | 22.07 | 21.24 |
| AT1G30090.1 | Thale cress | mitochondrion, plastid | 21.51 | 19.35 |
| AT1G55270.1 | Thale cress | mitochondrion | 22.91 | 18.89 |
| AT1G22040.1 | Thale cress | plastid | 24.3 | 18.32 |
| AT1G67480.1 | Thale cress | cytosol, mitochondrion | 18.99 | 18.09 |
| AT5G60570.2 | Thale cress | cytosol | 18.99 | 17.3 |
| AT1G16250.2 | Thale cress | cytosol | 18.44 | 17.23 |
| AT1G26930.1 | Thale cress | cytosol | 20.11 | 17.1 |
| AT1G27420.1 | Thale cress | cytosol, plastid | 16.48 | 17.05 |
| AT1G14330.1 | Thale cress | nucleus | 20.11 | 16.33 |
| AT2G02870.1 | Thale cress | nucleus | 19.55 | 14.99 |
| AT3G27150.1 | Thale cress | cytosol | 16.76 | 14.22 |
| AT1G74510.2 | Thale cress | cytosol | 17.6 | 13.97 |
| AT5G40680.1 | Thale cress | mitochondrion | 13.41 | 11.57 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:825307 | ProteinID:AEE80189.1 | EMBL:AF263380 | EMBL:AK119147 |
| ProteinID:ANM65048.1 | ArrayExpress:AT3G61350 | EnsemblPlantsGene:AT3G61350 | RefSeq:AT3G61350 | TAIR:AT3G61350 | RefSeq:AT3G61350-TAIR-G |
| EnsemblPlants:AT3G61350.2 | Unigene:At.48794 | EMBL:BT025245 | ProteinID:CAB71065.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009409 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 |
| InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | RefSeq:NP_001327045.1 | RefSeq:NP_567112.1 |
| PFAM:PF00646 | PFAM:PF01344 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF40 | UniProt:Q9M2C9 | Symbol:SKIP4 |
| SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI00000AABE5 | : | : |
Description
SKIP4F-box/kelch-repeat protein SKIP4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C9]
Coordinates
chr3:+:22702759..22704374
Molecular Weight (calculated)
40120.4 Da
IEP (calculated)
5.498
GRAVY (calculated)
-0.059
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MACIVEDPQR AGQSNETQIA LISGVPDDIS KSCLARVPRE YHMAMKCVSR RWRDFVCSDE MCDYRNEFNL AESWIYALCR DISGGVFLHM LNPFSSRRSW
101: KRINDYPYIP MREGMGFAVL GKRLFVLGGC GWLEDATDEI YCYDAAMNTW FDVVPPLSTK RCYFACETLD GKIIAIGGLG LNPNAKRTWD IYDPLTRTCK
201: SCSDVNIVPE MEDSFVMDGR IYIRGGVGGS STAVYSASSG IWERMDDDMA SGWRGPAVVV AGDLYVLDQT FGAKLTMWCK DTRMWIHIGK LSQLVMKQPC
301: RLVSIGNSIF VIGKDCSTVV IDVENVRKNK MNGVMVCSSI PKTWDDDIDV ISCKSVAI
101: KRINDYPYIP MREGMGFAVL GKRLFVLGGC GWLEDATDEI YCYDAAMNTW FDVVPPLSTK RCYFACETLD GKIIAIGGLG LNPNAKRTWD IYDPLTRTCK
201: SCSDVNIVPE MEDSFVMDGR IYIRGGVGGS STAVYSASSG IWERMDDDMA SGWRGPAVVV AGDLYVLDQT FGAKLTMWCK DTRMWIHIGK LSQLVMKQPC
301: RLVSIGNSIF VIGKDCSTVV IDVENVRKNK MNGVMVCSSI PKTWDDDIDV ISCKSVAI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.