Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400000478 | Potato | nucleus | 96.24 | 96.24 |
| VIT_15s0046g02710.t01 | Wine grape | cytosol | 57.89 | 64.35 |
| VIT_15s0046g02790.t01 | Wine grape | cytosol | 40.85 | 59.06 |
| KRH48153 | Soybean | cytosol | 51.38 | 56.63 |
| KRH48156 | Soybean | cytosol | 47.37 | 52.21 |
| KRH48154 | Soybean | cytosol | 48.12 | 52.17 |
| KRH65052 | Soybean | cytosol | 40.35 | 50.31 |
| AT3G61350.2 | Thale cress | cytosol | 45.11 | 50.28 |
| KRH65051 | Soybean | cytosol | 41.1 | 50.0 |
| Bra003447.1-P | Field mustard | cytosol | 42.36 | 47.08 |
| CDY58793 | Canola | cytosol | 42.36 | 47.08 |
| CDY51562 | Canola | cytosol | 42.11 | 46.8 |
| HORVU6Hr1G007030.1 | Barley | cytosol | 39.35 | 45.38 |
| EES06149 | Sorghum | cytosol | 39.1 | 45.09 |
| GSMUA_Achr4P20790_001 | Banana | extracellular | 42.36 | 44.83 |
| TraesCS6A01G037900.1 | Wheat | cytosol | 39.85 | 43.8 |
| Zm00001d014986_P001 | Maize | cytosol | 38.35 | 42.15 |
| Os02t0114600-02 | Rice | cytosol | 37.59 | 41.67 |
| TraesCS6D01G043400.1 | Wheat | cytosol | 39.6 | 41.36 |
| TraesCS6B01G052900.2 | Wheat | cytosol | 39.35 | 41.1 |
| Solyc09g065400.1.1 | Tomato | cytosol | 22.06 | 25.51 |
| Solyc06g008690.1.1 | Tomato | cytosol | 21.3 | 24.64 |
| Solyc01g005970.2.1 | Tomato | cytosol | 24.56 | 22.43 |
| Solyc07g042960.1.1 | Tomato | cytosol, mitochondrion | 9.52 | 21.59 |
| Solyc01g022740.2.1 | Tomato | cytosol | 23.31 | 21.28 |
| Solyc02g021600.1.1 | Tomato | cytosol, mitochondrion, peroxisome, plastid | 20.55 | 20.4 |
| Solyc04g005870.1.1 | Tomato | cytosol | 2.51 | 18.87 |
| Solyc01g104980.2.1 | Tomato | cytosol, plastid | 22.31 | 18.74 |
| Solyc04g005670.1.1 | Tomato | cytosol | 18.3 | 18.07 |
| Solyc03g113010.1.1 | Tomato | cytosol | 17.04 | 15.42 |
| Solyc07g042950.1.1 | Tomato | cytosol | 6.77 | 15.17 |
| Solyc11g069320.1.1 | Tomato | plastid | 8.27 | 15.14 |
| Solyc05g007220.2.1 | Tomato | nucleus | 18.8 | 11.65 |
| Solyc07g009410.2.1 | Tomato | cytosol | 12.28 | 10.99 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009409 | GO:GO:0009628 | InterPro:IPR001810 |
| InterPro:IPR015915 | UniProt:K4AZJ3 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF40 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | EnsemblPlantsGene:Solyc01g094520.2 |
| EnsemblPlants:Solyc01g094520.2.1 | UniParc:UPI000276897F | SEG:seg | : | : | : |
Description
F-box/kelch-repeat protein SKIP4 [Source:Projected from Arabidopsis thaliana (AT3G61350) UniProtKB/Swiss-Prot;Acc:Q9M2C9]
Coordinates
chr1:-:85957737..85960533
Molecular Weight (calculated)
44261.6 Da
IEP (calculated)
5.501
GRAVY (calculated)
-0.233
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSFKAAPSN PQGTGTNTEQ VYSELENFVV TENSLNNDQS VDVEDSGSGD NSELDPEASR LIPGLPDDIA LFCLARVPRR HHVLLKCVSR KWRDLVSGEE
101: WHSYRKKHDL QESWICALGR DKSEQLCCYV LDPTRLKRGW KPILGLPQRC IRRKGVGFEV LGKKLFLFGG CGWIEDATNE VYCYDAAMNK WNQATSLVVP
201: RCYCVSEVLD EKIYAIGGIG PNSNNLPSWE TYNTEIRSWT LHENPNIFPD IEDSIVLGGK IYIRGGSSPQ SSSVSAFVYE PSSSTWQPAA SELVSGWYGP
301: AVVVDGTLYV LDQSSGTRLM MWQKDIREWV AVGRLSPLLT KPPCRLVAVG NNIFIIGKGL STVVFNVENA RNMNGVLVST SIPKSISDDD VISCKAITI
101: WHSYRKKHDL QESWICALGR DKSEQLCCYV LDPTRLKRGW KPILGLPQRC IRRKGVGFEV LGKKLFLFGG CGWIEDATNE VYCYDAAMNK WNQATSLVVP
201: RCYCVSEVLD EKIYAIGGIG PNSNNLPSWE TYNTEIRSWT LHENPNIFPD IEDSIVLGGK IYIRGGSSPQ SSSVSAFVYE PSSSTWQPAA SELVSGWYGP
301: AVVVDGTLYV LDQSSGTRLM MWQKDIREWV AVGRLSPLLT KPPCRLVAVG NNIFIIGKGL STVVFNVENA RNMNGVLVST SIPKSISDDD VISCKAITI
001: MACIVEDPQR AGQSNETQIA LISGVPDDIS KSCLARVPRE YHMAMKCVSR RWRDFVCSDE MCDYRNEFNL AESWIYALCR DISGGVFLHM LNPFSSRRSW
101: KRINDYPYIP MREGMGFAVL GKRLFVLGGC GWLEDATDEI YCYDAAMNTW FDVVPPLSTK RCYFACETLD GKIIAIGGLG LNPNAKRTWD IYDPLTRTCK
201: SCSDVNIVPE MEDSFVMDGR IYIRGGVGGS STAVYSASSG IWERMDDDMA SGWRGPAVVV AGDLYVLDQT FGAKLTMWCK DTRMWIHIGK LSQLVMKQPC
301: RLVSIGNSIF VIGKDCSTVV IDVENVRKNK MNGVMVCSSI PKTWDDDIDV ISCKSVAI
101: KRINDYPYIP MREGMGFAVL GKRLFVLGGC GWLEDATDEI YCYDAAMNTW FDVVPPLSTK RCYFACETLD GKIIAIGGLG LNPNAKRTWD IYDPLTRTCK
201: SCSDVNIVPE MEDSFVMDGR IYIRGGVGGS STAVYSASSG IWERMDDDMA SGWRGPAVVV AGDLYVLDQT FGAKLTMWCK DTRMWIHIGK LSQLVMKQPC
301: RLVSIGNSIF VIGKDCSTVV IDVENVRKNK MNGVMVCSSI PKTWDDDIDV ISCKSVAI
Arabidopsis Description
SKIP4F-box/kelch-repeat protein SKIP4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.