Factsheet for Solyc07g042960.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35074	Canola	cytosol	46.59	39.23
Bra026073.1-P	Field mustard	cytosol	46.02	39.13
Bra005497.1-P	Field mustard	cytosol	31.25	38.19
CDY17172	Canola	cytosol	31.25	38.19
AT1G16250.2	Thale cress	cytosol	57.95	26.63
CDX81755	Canola	cytosol	57.39	25.9
CDX96822	Canola	extracellular, vacuole	57.39	23.38
GSMUA_Achr2P18470_001	Banana	cytosol	52.84	21.83
Solyc06g008690.1.1	Tomato	cytosol	30.68	15.65
Solyc09g065400.1.1	Tomato	cytosol	28.98	14.78
CDY33348	Canola	cytosol	14.2	13.89
Solyc02g021600.1.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	27.84	12.19
Solyc01g104980.2.1	Tomato	cytosol, plastid	28.98	10.74
Solyc01g005970.2.1	Tomato	cytosol	26.14	10.53
Solyc01g022740.2.1	Tomato	cytosol	25.57	10.3
Solyc01g094520.2.1	Tomato	nucleus	21.59	9.52
Solyc04g005670.1.1	Tomato	cytosol	21.02	9.16
Solyc03g113010.1.1	Tomato	cytosol	19.89	7.94
Solyc11g069320.1.1	Tomato	plastid	8.52	6.88
Solyc07g009410.2.1	Tomato	cytosol	16.48	6.5
Solyc05g007220.2.1	Tomato	nucleus	19.32	5.28
Solyc07g042950.1.1	Tomato	cytosol	1.7	1.69
Solyc04g005870.1.1	Tomato	cytosol	0.0	0.0
CDY35075	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc07g042960.1.1	EnsemblPlantsGene:Solyc07g042960.1	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24414	PANTHER:PTHR24414:SF41	PFAM:PF01344
SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI000276C1EB	UniProt:K4CEF6	MapMan:35.1	:

Description

No Description!

Coordinates

chr7:-:56490976..56496822

Molecular Weight (calculated)

19953.5 Da

IEP (calculated)

9.098

GRAVY (calculated)

-0.457

Length

176 amino acids

Sequence
(BLAST)

001: MISHGYHGIL ETVSRRWRKL FHSAEYSNYK AREGWSGNWL FVLTGGSENQ WVAYDPEADR WHPLPRIPTS HPDQEHLGFS CACVLNKFLL IGGTYGARDQ
101: VIPHQTALTT NEVFQFDPFR KEWRNVASMR TARSNFACSV VSGKVYVAGG RNTSSGGGLV LAEVYNPLTD KKQYFH

Best Arabidopsis Sequence Match ( AT1G16250.2 )
(BLAST)

001: MESIEQSIIP GLPDDLALRC IAKLSHGYHG VLECVSRGWR DLVRGADYSC YKARNGWSGS WLFVLTERSK NQWVAYDPEA DRWHPLPRTR AVQDGWHHSG
101: FACVCVSNCL LVIGGCYAPS VSSFPHQKPV VTKDVMRFDP FKKQWKMVAS MRTPRTHFAC TSVSGKVYVA GGRNLTHSRG IPSAEVYDPV ADRWEELPAM
201: PRPQMDCSGL SYRGCFHVLS DQVGFAEQNS SEVFNPRDMT WSTVEDVWPF SRAMQFAVQV MKNDRVYTIV DWGESLIKTR DTDEGEWYNV GSVPSVVLPN
301: HPRELEAFGY GFAALRNELY VIGGKVLKWE ESGAGRFDIV RLPVVRVCNP LDRPLNWRET KPMCIPAGGS IIGCVSLEES SPP

Arabidopsis Description

F-box/kelch-repeat protein At1g16250 [Source:UniProtKB/Swiss-Prot;Acc:Q0WW40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.