Factsheet for Solyc07g009410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
extracellular 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021985	Potato	nucleus	55.83	59.71
CDY66938	Canola	cytosol, mitochondrion	17.49	44.32
KRH57678	Soybean	cytosol	38.34	43.4
KRH06951	Soybean	cytosol	39.24	43.32
KRG94518	Soybean	mitochondrion	38.79	43.14
CDY65956	Canola	cytosol	18.16	43.09
Bra032052.1-P	Field mustard	cytosol	16.37	41.48
CDY53460	Canola	cytosol	16.37	41.48
CDX82682	Canola	cytosol	28.92	41.21
Solyc11g069320.1.1	Tomato	plastid	19.96	40.83
VIT_14s0068g02150.t01	Wine grape	cytosol	41.48	38.78
CDY28493	Canola	cytosol	34.08	36.98
Bra032983.1-P	Field mustard	cytosol	33.86	36.74
CDY34175	Canola	cytosol	33.63	36.5
AT3G27150.1	Thale cress	cytosol	34.08	36.02
Solyc04g005870.1.1	Tomato	cytosol	4.04	33.96
CDY52395	Canola	cytosol	32.06	33.03
CDY13683	Canola	cytosol	31.84	32.79
Bra025251.1-P	Field mustard	cytosol	31.84	32.79
Bra010784.1-P	Field mustard	cytosol	28.92	32.49
CDX90239	Canola	cytosol	28.92	32.49
CDY49979	Canola	cytosol	28.92	31.62
CDY36146	Canola	cytosol	29.37	31.41
CDY63005	Canola	cytosol	29.37	31.41
AT5G40680.1	Thale cress	mitochondrion	29.15	31.33
CDY69929	Canola	cytosol	29.15	31.18
CDY64780	Canola	cytosol	29.15	29.95
Bra034944.1-P	Field mustard	cytosol	27.35	29.83
CDY12345	Canola	cytosol	28.25	27.69
Solyc04g005670.1.1	Tomato	cytosol	24.66	27.23
CDY49977	Canola	cytosol	27.58	26.17
Solyc03g113010.1.1	Tomato	cytosol	24.22	24.49
Solyc05g007220.2.1	Tomato	nucleus	24.44	16.93
Solyc07g042960.1.1	Tomato	cytosol, mitochondrion	6.5	16.48
Solyc09g065400.1.1	Tomato	cytosol	12.11	15.65
Solyc06g008690.1.1	Tomato	cytosol	11.88	15.36
Solyc07g042950.1.1	Tomato	cytosol	5.61	14.04
Solyc01g005970.2.1	Tomato	cytosol	13.23	13.5
Solyc01g104980.2.1	Tomato	cytosol, plastid	14.35	13.47
Solyc01g022740.2.1	Tomato	cytosol	13.0	13.27
Solyc02g021600.1.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	11.44	12.69
Solyc01g094520.2.1	Tomato	nucleus	10.99	12.28

Protein Annotations

Gene3D:2.120.10.80	Gene3D:2.90.10.10	MapMan:35.1	InterPro:Bulb-type_lectin_dom	InterPro:Bulb-type_lectin_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019005
GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787	GO:GO:0043161	InterPro:IPR001480
InterPro:IPR015915	InterPro:IPR036426	UniProt:K4CC60	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF01344
PFAM:PF01453	PFscan:PS50927	PANTHER:PTHR24413	PANTHER:PTHR24413:SF160	SMART:SM00108	SMART:SM00612
SUPFAM:SSF117281	SUPFAM:SSF51110	EnsemblPlantsGene:Solyc07g009410.2	EnsemblPlants:Solyc07g009410.2.1	UniParc:UPI000276B9E9	SEG:seg

Description

No Description!

Coordinates

chr7:+:4479008..4481086

Molecular Weight (calculated)

49876.4 Da

IEP (calculated)

8.380

GRAVY (calculated)

-0.258

Length

446 amino acids

Sequence
(BLAST)

001: MLASGETNWW TFDREFKSRR KIPDLPSDVC FKFGDKESLC AGTHLLVSGR EIDGLVIWRF ELATNCWYKG PSMVNPRCLF ASATCGTSAF VAGGVGIMAN
101: SEVYDTAEKY NPNSRSWETL PRMKRKRKLC SGCYMDNKFY VIGGRNENGE LTCGEFFDEG SNKWELIPDM LRDDPVLTCH SPPLIAVVNN ELYSLEASSN
201: KLKLYLKKTN TWKMLGQVPV RADSNRGWGI AFKSLGNELL VIGAASSSAS YSGDTISANK SLSFGETTVS SGEKFELGFF KPGNSFNYYI GIWYKNTILW
301: QNVVWVANRD KPLDYGTTNL TILHGNLVLI DKFQGIVWKT HAASIITSNH LVIAVLRDDG NLILSDMPNS STPLILWESF DYPTDTLLPG AKLGYDKRRT
401: QRGQVLISWK SLSDPAPGLY SLELDPSHAR FVIKWNRTKQ FCASGS

Best Arabidopsis Sequence Match ( AT3G27150.2 )
(BLAST)

001: MLTLGEDQIG RIGASSSWSR SKKLRVHRYE IPDLNVEPSL DWDGEETGEA TKALSSTCLK PKDADYCLLN VPQLVYELEV EILARVPRFE YWKLKLLNKG
101: FSRLLKSDEI FKVRRERGVV EPSVFMLSSG DTCWTMFDKG FGNCQKLPEL PSDICFLHGD KESLCAGTHL IVTGKEEKSI ALWRYELETS KWFKGPAMIT
201: PRILFASATC GTVVFVAGGL KIEGNGTMEV VDSVEKYDSK TKTWTLLRGM HKRRKFCSGC YLRGKFYVLG GRDENGQNLT CGESYDEKTN TWELIPDILK
301: DMSFSSVQSP PLIAVVGDDL YSLETSANEL RVYDANANSW KKLGDVPVRA KSNGGWGVAF KSLGDKLLVI GASAGPSRAE TMSVYTSRPS ANPANKLYWE
401: ESKRCCGVRF NHFILNCCVM IA

Arabidopsis Description

F-box/kelch-repeat protein At3g27150 [Source:UniProtKB/Swiss-Prot;Acc:Q9LI89]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.