Factsheet for PGSC0003DMT400021985

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06951	Soybean	cytosol	54.68	56.44
KRG94518	Soybean	mitochondrion	54.2	56.36
KRH57678	Soybean	cytosol	53.24	56.35
Solyc07g009410.2.1	Tomato	cytosol	59.71	55.83
VIT_14s0068g02150.t01	Wine grape	cytosol	62.35	54.51
Bra032983.1-P	Field mustard	cytosol	50.36	51.09
CDY28493	Canola	cytosol	50.36	51.09
CDY34175	Canola	cytosol	50.36	51.09
CDY66938	Canola	cytosol, mitochondrion	20.86	49.43
AT3G27150.1	Thale cress	cytosol	49.88	49.29
Bra032052.1-P	Field mustard	cytosol	19.66	46.59
CDY53460	Canola	cytosol	19.66	46.59
CDY65956	Canola	cytosol	20.86	46.28
CDY13683	Canola	cytosol	47.48	45.73
CDY52395	Canola	cytosol	47.24	45.5
Bra025251.1-P	Field mustard	cytosol	47.24	45.5
CDX82682	Canola	cytosol	34.05	45.37
CDY49979	Canola	cytosol	41.73	42.65
CDX90239	Canola	cytosol	40.29	42.32
Bra010784.1-P	Field mustard	cytosol	40.29	42.32
AT5G40680.1	Thale cress	mitochondrion	41.73	41.93
CDY64780	Canola	cytosol	41.97	40.32
CDY36146	Canola	cytosol	40.29	40.29
CDY63005	Canola	cytosol	40.29	40.29
CDY69929	Canola	cytosol	39.81	39.81
Bra034944.1-P	Field mustard	cytosol	38.61	39.36
CDY12345	Canola	cytosol	41.25	37.8
PGSC0003DMT400020936	Potato	cytosol	32.61	35.05
CDY49977	Canola	cytosol	38.13	33.83
PGSC0003DMT400007346	Potato	nucleus	32.85	31.64
PGSC0003DMT400046591	Potato	extracellular	32.13	29.39
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	11.03	29.11
PGSC0003DMT400007391	Potato	cytosol	9.11	28.36
PGSC0003DMT400059324	Potato	cytosol	31.89	27.71
PGSC0003DMT400049746	Potato	cytosol	17.51	21.16
PGSC0003DMT400013635	Potato	cytosol	16.31	19.71
PGSC0003DMT400034149	Potato	cytosol	20.14	19.22
PGSC0003DMT400081852	Potato	cytosol	19.66	18.76
PGSC0003DMT400032733	Potato	cytosol, plastid	20.38	17.89
PGSC0003DMT400008228	Potato	cytosol, mitochondrion, peroxisome, plastid	17.03	17.66
PGSC0003DMT400000478	Potato	nucleus	14.63	15.29

Protein Annotations

EntrezGene:102594271	Gene3D:2.120.10.80	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M1AFZ2	PFAM:PF01344	EnsemblPlantsGene:PGSC0003DMG400008524
PGSC:PGSC0003DMG400008524	EnsemblPlants:PGSC0003DMT400021985	PANTHER:PTHR24413	PANTHER:PTHR24413:SF160	SMART:SM00612	SUPFAM:SSF117281
UniParc:UPI0002950B78	RefSeq:XP_006359067.1	RefSeq:XP_015169736.1	RefSeq:XP_015169737.1	SEG:seg	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008524]

Coordinates

chr7:+:7499230..7502018

Molecular Weight (calculated)

47358.2 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.477

Length

417 amino acids

Sequence
(BLAST)

001: MLDLNKIEPE EGKLDLDLRR VNYDLDDKSH LRYGDWVTFK SHSSKKVRIS RPESPRGENS DRQPQDADYP SLSYELESEI LSRFPRWEYW KLSLVNKRCS
101: MLLKSGEIFE IRKENGFKEP SVYMLASGET NWWTFDREFN SRRKIPDLPS DVCFTFGDKE SLCAGTHLLV SGREIDGLVI WRFELATNCW YKGPSMVNPR
201: CLFASATCGT SAFVAGGVGI MANSEVYDTA EKYNPDSRSW DPLPRMKRKR KLCSGCYMDK KFYVIGGRNE NGELTCGEFF DEGKNKWELI PDMLKDDPVL
301: TCHSPPLIAV VNNELYSLEA SSNQLKLYLK KTNTWKMLGQ VPVRADSNRG WGIAFKSLGN ELLVIGAASS SASYSGNSMA IYTCCPDPDA IELQWQPLDS
401: GRNRLSSFIL NCSVMVA

Best Arabidopsis Sequence Match ( AT3G27150.2 )
(BLAST)

001: MLTLGEDQIG RIGASSSWSR SKKLRVHRYE IPDLNVEPSL DWDGEETGEA TKALSSTCLK PKDADYCLLN VPQLVYELEV EILARVPRFE YWKLKLLNKG
101: FSRLLKSDEI FKVRRERGVV EPSVFMLSSG DTCWTMFDKG FGNCQKLPEL PSDICFLHGD KESLCAGTHL IVTGKEEKSI ALWRYELETS KWFKGPAMIT
201: PRILFASATC GTVVFVAGGL KIEGNGTMEV VDSVEKYDSK TKTWTLLRGM HKRRKFCSGC YLRGKFYVLG GRDENGQNLT CGESYDEKTN TWELIPDILK
301: DMSFSSVQSP PLIAVVGDDL YSLETSANEL RVYDANANSW KKLGDVPVRA KSNGGWGVAF KSLGDKLLVI GASAGPSRAE TMSVYTSRPS ANPANKLYWE
401: ESKRCCGVRF NHFILNCCVM IA

Arabidopsis Description

F-box/kelch-repeat protein At3g27150 [Source:UniProtKB/Swiss-Prot;Acc:Q9LI89]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.