Factsheet for PGSC0003DMT400007346

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g005670.1.1	Tomato	cytosol	90.53	97.03
PGSC0003DMT400059324	Potato	cytosol	77.6	70.0
CDY33755	Canola	cytosol	19.86	69.92
TraesCS4D01G286700.1	Wheat	cytosol	48.73	63.94
Bra026838.1-P	Field mustard	nucleus	59.12	62.9
CDY62015	Canola	nucleus	60.28	62.89
CDX81631	Canola	nucleus	59.35	62.84
AT1G14330.1	Thale cress	nucleus	63.74	62.59
PGSC0003DMT400046591	Potato	extracellular	65.82	62.5
AT1G26930.1	Thale cress	cytosol	60.74	62.47
CDY60836	Canola	cytosol	54.73	62.37
TraesCS4A01G493800.1	Wheat	cytosol	36.03	62.15
CDY49094	Canola	nucleus	60.74	62.03
Bra026575.1-P	Field mustard	nucleus	62.82	61.26
Bra017407.1-P	Field mustard	nucleus, plastid	61.89	61.05
CDY09349	Canola	nucleus	62.59	61.04
CDY62176	Canola	nucleus	62.82	60.85
Zm00001d052253_P001	Maize	cytosol	59.35	60.76
TraesCS6D01G285100.1	Wheat	cytosol, nucleus, plastid	59.35	60.47
TraesCS6A01G306000.1	Wheat	cytosol	59.35	60.47
AT2G02870.1	Thale cress	nucleus	65.13	60.39
GSMUA_Achr4P09990_001	Banana	cytosol	59.82	60.37
TraesCS6B01G334300.1	Wheat	cytosol, nucleus, plastid	59.12	60.24
HORVU6Hr1G075590.1	Barley	cytosol, nucleus, plastid	58.89	60.0
CDY45190	Canola	nucleus	62.59	59.82
Bra024801.1-P	Field mustard	nucleus	62.59	59.82
CDY03028	Canola	cytosol	61.89	59.69
CDY46430	Canola	cytosol	58.66	59.62
Bra016297.1-P	Field mustard	cytosol	58.66	59.62
CDY17425	Canola	cytosol	55.2	59.6
CDY52764	Canola	cytosol	58.43	59.53
KXG30756	Sorghum	cytosol	58.43	59.53
Os02t0748300-01	Rice	cytosol	58.2	59.15
CDY16205	Canola	nucleus	57.74	59.1
GSMUA_Achr7P20970_001	Banana	cytosol	53.12	58.23
GSMUA_Achr4P00520_001	Banana	cytosol	51.27	57.07
VIT_01s0026g02080.t01	Wine grape	nucleus	70.9	56.75
GSMUA_Achr8P01380_001	Banana	cytosol	49.65	56.58
KRH45883	Soybean	cytosol	69.75	56.03
GSMUA_Achr1P21630_001	Banana	cytosol	48.5	55.7
KRH74828	Soybean	cytosol	68.82	55.49
KRG99114	Soybean	cytosol	68.82	55.29
Zm00001d048310_P001	Maize	cytosol	54.27	54.91
Os03t0171600-01	Rice	cytosol	54.5	54.76
KXG40080	Sorghum	cytosol	54.04	54.67
TraesCS7A01G004600.1	Wheat	cytosol	45.96	54.67
CDY33754	Canola	nucleus	31.41	54.4
KRH70694	Soybean	cytosol	67.67	54.36
Zm00001d027856_P001	Maize	cytosol	53.81	54.31
TraesCS4A01G016200.1	Wheat	cytosol	53.58	53.83
HORVU4Hr1G075310.1	Barley	cytosol	54.04	53.3
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	19.4	53.16
TraesCS7D01G005100.1	Wheat	cytosol	26.33	53.02
TraesCS7D01G007100.1	Wheat	cytosol	45.27	52.69
OQU91835	Sorghum	cytosol, nucleus, plastid	53.58	52.25
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	53.35	52.14
GSMUA_Achr8P17960_001	Banana	nucleus	49.88	51.92
Zm00001d033012_P001	Maize	cytosol	53.35	51.79
GSMUA_Achr10P...	Banana	nucleus	50.81	50.57
Os11t0602800-01	Rice	nucleus	50.35	50.46
HORVU2Hr1G057150.1	Barley	cytosol	21.48	50.0
HORVU2Hr1G057140.1	Barley	cytosol	21.48	50.0
PGSC0003DMT400007391	Potato	cytosol	15.24	49.25
TraesCS4A01G487800.1	Wheat	cytosol	29.1	48.84
Zm00001d048898_P001	Maize	cytosol	48.96	48.74
GSMUA_Achr2P14920_001	Banana	mitochondrion	53.12	48.12
PGSC0003DMT400020936	Potato	cytosol	42.96	47.94
OQU83795	Sorghum	cytosol	48.73	47.31
Zm00001d007596_P001	Maize	nucleus, plastid	47.81	46.94
TraesCS4A01G492300.1	Wheat	cytosol, golgi, plastid	41.57	46.75
TraesCS4A01G489600.1	Wheat	cytosol	39.95	45.77
TraesCS4A01G489300.1	Wheat	cytosol	40.18	45.67
GSMUA_Achr3P01570_001	Banana	golgi	49.88	44.17
GSMUA_Achr4P24130_001	Banana	nucleus	51.73	43.33
HORVU7Hr1G000010.5	Barley	cytosol	41.34	40.87
HORVU7Hr1G000070.1	Barley	cytosol	43.19	35.62
TraesCS4A01G491100.1	Wheat	cytosol	42.26	34.79
PGSC0003DMT400021985	Potato	nucleus	31.64	32.85
TraesCS4A01G493200.1	Wheat	cytosol, plasma membrane	34.87	31.86
PGSC0003DMT400049746	Potato	cytosol	15.7	19.71
PGSC0003DMT400081852	Potato	cytosol	19.86	19.68
PGSC0003DMT400032733	Potato	cytosol, plastid	21.48	19.58
PGSC0003DMT400013635	Potato	cytosol	15.24	19.13
PGSC0003DMT400034149	Potato	cytosol	19.17	18.99
PGSC0003DMT400000478	Potato	nucleus	17.32	18.8
PGSC0003DMT400008228	Potato	cytosol, mitochondrion, peroxisome, plastid	16.17	17.41

Protein Annotations

EnsemblPlants:PGSC0003DMT400007346	EnsemblPlantsGene:PGSC0003DMG400002826	EntrezGene:102593767	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF138
PFAM:PF01344	PGSC:PGSC0003DMG400002826	RefSeq:XP_006344271.1	SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI0002962358
UniProt:M0ZSU4	MapMan:35.1	:	:	:	:

Description

Kelch repeat-containing F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002826]

Coordinates

chr4:+:302644..305550

Molecular Weight (calculated)

48513.4 Da

IEP (calculated)

5.919

GRAVY (calculated)

-0.408

Length

433 amino acids

Sequence
(BLAST)

001: MLEDRSCLVP RDFTRESNNW SACMNYSLDM IEVQHGKRPL ENNQEDEVVQ RKLPKLSDAR DGEEVVLASP DDQAGDQRHD EDTSSLIPSI GRDNSVSSLI
101: HCSRSDYGAI ASLNRSFRSL IRSGELYRLR RQQGVVEHWV YFSCHLRQWE AFDPIRRRWM HLPSMNFNEC FVFSDKESLA VGTELLVFGK EILSHVIYRY
201: SILTNSWSSG MEMNAPRCLF GSASSGEIAI LAGGCDSQGN ILSSAELYNS ETGTWKTLPS MNKRRKMCSA VFMDNKFYVI GGIGGTESSN ALLTCGEEYD
301: LKTEKWTEIS SMSPVRARGD MPATSEAPPL VAVVNNDLYA ADYADMEVRK YDKQNKIWAT IGRLPERAAS MNGWGLAFRA CGDRLIVIGG PRTMGEGHIE
401: VNSWVPSEGP PQWNLLGRKR SGSFVYNCAV MGC

Best Arabidopsis Sequence Match ( AT2G02870.2 )
(BLAST)

001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC

Arabidopsis Description

SKIP11F-box/kelch-repeat protein SKIP11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L736]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.