Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P00520_001 | Banana | cytosol | 75.29 | 83.03 |
| GSMUA_Achr7P20970_001 | Banana | cytosol | 75.06 | 81.52 |
| Zm00001d052253_P001 | Maize | cytosol | 67.83 | 68.79 |
| KXG30756 | Sorghum | cytosol | 68.07 | 68.71 |
| TraesCS6D01G285100.1 | Wheat | cytosol, nucleus, plastid | 67.83 | 68.47 |
| TraesCS6A01G306000.1 | Wheat | cytosol | 67.6 | 68.24 |
| TraesCS6B01G334300.1 | Wheat | cytosol, nucleus, plastid | 67.6 | 68.24 |
| HORVU6Hr1G075590.1 | Barley | cytosol, nucleus, plastid | 67.6 | 68.24 |
| Os02t0748300-01 | Rice | cytosol | 67.37 | 67.84 |
| CDY33755 | Canola | cytosol | 18.88 | 65.85 |
| GSMUA_Achr8P01380_001 | Banana | cytosol | 56.41 | 63.68 |
| Solyc04g005870.1.1 | Tomato | cytosol | 7.69 | 62.26 |
| GSMUA_Achr1P21630_001 | Banana | cytosol | 54.55 | 62.07 |
| VIT_17s0000g05920.t01 | Wine grape | cytosol | 63.87 | 61.85 |
| GSMUA_Achr8P17960_001 | Banana | nucleus | 58.51 | 60.34 |
| Solyc04g005670.1.1 | Tomato | cytosol | 56.64 | 60.15 |
| PGSC0003DMT400007346 | Potato | nucleus | 60.37 | 59.82 |
| CDX81631 | Canola | nucleus | 56.41 | 59.17 |
| Bra026838.1-P | Field mustard | nucleus | 55.94 | 58.97 |
| CDY62015 | Canola | nucleus | 56.41 | 58.31 |
| GSMUA_Achr10P... | Banana | nucleus | 58.74 | 57.93 |
| CDY60836 | Canola | cytosol | 50.82 | 57.37 |
| AT1G14330.1 | Thale cress | nucleus | 58.51 | 56.92 |
| KRH54527 | Soybean | cytosol | 58.51 | 56.92 |
| Solyc03g113010.1.1 | Tomato | cytosol | 58.51 | 56.92 |
| KRH63378 | Soybean | cytosol | 58.51 | 56.92 |
| CDY49094 | Canola | nucleus | 55.94 | 56.6 |
| Bra017407.1-P | Field mustard | nucleus, plastid | 57.81 | 56.49 |
| GSMUA_Achr2P14920_001 | Banana | mitochondrion | 62.47 | 56.07 |
| CDY17425 | Canola | cytosol | 52.21 | 55.86 |
| Bra026575.1-P | Field mustard | nucleus | 57.81 | 55.86 |
| CDY09349 | Canola | nucleus | 57.58 | 55.63 |
| CDY62176 | Canola | nucleus | 57.58 | 55.26 |
| PGSC0003DMT400046591 | Potato | extracellular | 58.28 | 54.82 |
| CDY45190 | Canola | nucleus | 57.58 | 54.53 |
| CDY03028 | Canola | cytosol | 56.88 | 54.34 |
| Bra024801.1-P | Field mustard | nucleus | 57.34 | 54.3 |
| AT2G02870.1 | Thale cress | nucleus | 58.74 | 53.96 |
| KRH03453 | Soybean | cytosol | 51.05 | 53.68 |
| CDY33754 | Canola | nucleus | 30.3 | 52.0 |
| AT1G26930.1 | Thale cress | cytosol | 50.82 | 51.78 |
| CDY46430 | Canola | cytosol | 51.05 | 51.41 |
| Bra016297.1-P | Field mustard | cytosol | 50.82 | 51.17 |
| CDY52764 | Canola | cytosol | 50.58 | 51.06 |
| GSMUA_Achr4P24130_001 | Banana | nucleus | 61.07 | 50.68 |
| PGSC0003DMT400059324 | Potato | cytosol | 56.41 | 50.42 |
| KRH56929 | Soybean | cytosol | 47.55 | 50.12 |
| CDY16205 | Canola | nucleus | 48.72 | 49.41 |
| VIT_01s0026g02080.t01 | Wine grape | nucleus | 62.24 | 49.35 |
| GSMUA_Achr3P01570_001 | Banana | golgi | 55.94 | 49.08 |
| KRH45883 | Soybean | cytosol | 60.37 | 48.05 |
| KRG99114 | Soybean | cytosol | 60.14 | 47.87 |
| GSMUA_Achr3P23350_001 | Banana | cytosol, extracellular | 44.76 | 47.64 |
| KRH74828 | Soybean | cytosol | 59.44 | 47.49 |
| KRH70694 | Soybean | cytosol | 58.97 | 46.94 |
| PGSC0003DMT400091785 | Potato | cytosol, mitochondrion, plastid | 16.32 | 44.3 |
| GSMUA_Achr9P30470_001 | Banana | cytosol | 39.63 | 43.48 |
| PGSC0003DMT400007391 | Potato | cytosol | 13.05 | 41.79 |
| GSMUA_Achr11P... | Banana | cytosol | 40.79 | 39.77 |
| Solyc05g007220.2.1 | Tomato | nucleus | 55.71 | 37.11 |
| GSMUA_Achr6P24370_001 | Banana | cytosol | 17.72 | 21.9 |
| GSMUA_AchrUn_... | Banana | cytosol | 17.02 | 20.45 |
| GSMUA_Achr6P04050_001 | Banana | cytosol | 21.45 | 20.22 |
| GSMUA_Achr7P27010_001 | Banana | cytosol | 18.88 | 19.47 |
| GSMUA_Achr7P08330_001 | Banana | cytosol | 17.72 | 19.29 |
| GSMUA_Achr3P29560_001 | Banana | cytosol | 18.18 | 18.98 |
| GSMUA_Achr8P28270_001 | Banana | cytosol | 16.78 | 18.75 |
| GSMUA_Achr4P20790_001 | Banana | extracellular | 16.32 | 18.57 |
| GSMUA_Achr6P31190_001 | Banana | mitochondrion | 17.48 | 18.25 |
| GSMUA_Achr6P20750_001 | Banana | cytosol, mitochondrion, plasma membrane, plastid | 16.55 | 18.21 |
| GSMUA_Achr3P16120_001 | Banana | cytosol, mitochondrion, plasma membrane, plastid | 16.08 | 18.06 |
| GSMUA_Achr10P... | Banana | cytosol | 21.45 | 17.69 |
| GSMUA_Achr2P17100_001 | Banana | cytosol, plastid | 16.78 | 17.65 |
| GSMUA_Achr2P18470_001 | Banana | cytosol | 17.48 | 17.61 |
| GSMUA_Achr2P22090_001 | Banana | cytosol | 13.99 | 15.92 |
| GSMUA_Achr4P03630_001 | Banana | plasma membrane | 18.18 | 9.19 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P09990_001 | EnsemblPlants:GSMUA_Achr4T09990_001 | EnsemblPlantsGene:GSMUA_Achr4G09990_001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF133 |
| PFAM:PF01344 | SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI000295D2B8 | UniProt:M0SML6 | MapMan:35.1 |
Description
F-box/kelch-repeat protein SKIP11 [Source:GMGC_GENE;Acc:GSMUA_Achr4G09990_001]
Coordinates
chr4:+:7305853..7307878
Molecular Weight (calculated)
48049.2 Da
IEP (calculated)
6.263
GRAVY (calculated)
-0.347
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDRKSCLIT RALSSSREQE SKWVYMTYHL LEITTTKRAP SVEPLELEET AKVKRSKSTE LQEPPSSLDE SCCPSDDDNH FSDTNSLIGQ IGRDMSIKCL
101: VQCSRSDYGT LASLNRAFNS LIRSGDLYKL RRHDGIIEHW IYFSCNINEW EAYDPYCGRW INLPRMPPND FFMRSDKESL AVGTELLVFG RDYTSRISHI
201: ILRYSILTNS WSQGVEMNSP RCLFGSASFG ERAIVAGGID ARGTILSSAE LYNSETQNWV SLPSMNQPRK MCSGVFMDNK FYVIGGMSSP TDLLTCGEEY
301: DMKKGTWRVI PSMSLGLNGP SGAPPLVAVV NNELYAADYA EKEVRKYDKQ SNSWITLGRL PERPDSVNGW GLAFRACGER LIVIGGPRVL GGGMIELNSW
401: TPRDGPPEWN MIASKHCGSF VYNCAVMGC
101: VQCSRSDYGT LASLNRAFNS LIRSGDLYKL RRHDGIIEHW IYFSCNINEW EAYDPYCGRW INLPRMPPND FFMRSDKESL AVGTELLVFG RDYTSRISHI
201: ILRYSILTNS WSQGVEMNSP RCLFGSASFG ERAIVAGGID ARGTILSSAE LYNSETQNWV SLPSMNQPRK MCSGVFMDNK FYVIGGMSSP TDLLTCGEEY
301: DMKKGTWRVI PSMSLGLNGP SGAPPLVAVV NNELYAADYA EKEVRKYDKQ SNSWITLGRL PERPDSVNGW GLAFRACGER LIVIGGPRVL GGGMIELNSW
401: TPRDGPPEWN MIASKHCGSF VYNCAVMGC
001: MVEDRTYLMS RIFSSSRLSE SKWPYMYPQP EDSSESNLIN GKRALENDVD ELRQSKSPRL MGFSIHGNEA IEEDEQEQDQ SDSNNNGNSD GDSLINDIGR
101: DNSISCLIRC SRSGYGSIAS LNRSFRSLVK TGEIYRLRRQ NQIVEHWVYF SCQLLEWVAF NPFERRWMNL PTMPSGVTFM CADKESLAVG TDLLVLGKDD
201: YSSHVIYRYS LLTNSWSSGM RMNSPRCLFG SASLGEIAIF AGGFDSFGKI SDSAEMYNSE LQTWTTLPKM NKPRKMCSGV FMDGKFYVIG GIGGNDSKVL
301: TCGEEFDLET KKWTEIPEMS PPRSREMPAA AEAPPLVAVV NNELYAADHA DMEVRKYDKE SKKWFTLGRL PERADSVNGW GLAFRACGER LIVIGGPRSS
401: GGGYIELNSW IPSSDRSPPL WTLLGRKHSS NFVYNCAVMG C
101: DNSISCLIRC SRSGYGSIAS LNRSFRSLVK TGEIYRLRRQ NQIVEHWVYF SCQLLEWVAF NPFERRWMNL PTMPSGVTFM CADKESLAVG TDLLVLGKDD
201: YSSHVIYRYS LLTNSWSSGM RMNSPRCLFG SASLGEIAIF AGGFDSFGKI SDSAEMYNSE LQTWTTLPKM NKPRKMCSGV FMDGKFYVIG GIGGNDSKVL
301: TCGEEFDLET KKWTEIPEMS PPRSREMPAA AEAPPLVAVV NNELYAADHA DMEVRKYDKE SKKWFTLGRL PERADSVNGW GLAFRACGER LIVIGGPRSS
401: GGGYIELNSW IPSSDRSPPL WTLLGRKHSS NFVYNCAVMG C
Arabidopsis Description
At1g14330/F14L17_7 [Source:UniProtKB/TrEMBL;Acc:Q9M9S9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.