Factsheet for GSMUA_Achr6P31190_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0153400-01	Rice	mitochondrion	73.97	74.88
TraesCS2D01G499800.1	Wheat	mitochondrion	70.32	71.36
TraesCS2A01G499700.1	Wheat	cytosol, mitochondrion	68.86	71.11
EER97991	Sorghum	mitochondrion	71.05	70.53
Zm00001d018813_P001	Maize	mitochondrion	69.34	69.51
KRH21075	Soybean	mitochondrion	63.99	64.94
KRH11179	Soybean	mitochondrion, plastid	63.26	64.2
PGSC0003DMT400008228	Potato	cytosol, mitochondrion, peroxisome, plastid	62.77	64.18
Solyc02g021600.1.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	62.29	63.68
VIT_10s0003g03730.t01	Wine grape	cytosol	33.82	60.43
CDY26295	Canola	mitochondrion, plastid	56.2	58.04
CDX99882	Canola	mitochondrion, plastid	55.96	57.79
Bra032358.1-P	Field mustard	mitochondrion, plastid	55.72	57.54
AT1G30090.1	Thale cress	mitochondrion, plastid	55.72	57.54
GSMUA_AchrUn_...	Banana	cytosol	35.04	40.34
GSMUA_Achr3P29560_001	Banana	cytosol	26.28	26.28
GSMUA_Achr7P27010_001	Banana	cytosol	26.52	26.2
GSMUA_Achr7P08330_001	Banana	cytosol	24.57	25.63
GSMUA_Achr2P17100_001	Banana	cytosol, plastid	25.3	25.49
GSMUA_Achr6P24370_001	Banana	cytosol	21.17	25.07
GSMUA_Achr6P20750_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	21.41	22.56
GSMUA_Achr6P04050_001	Banana	cytosol	24.82	22.42
GSMUA_Achr8P28270_001	Banana	cytosol	20.92	22.4
GSMUA_Achr3P16120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	20.44	21.99
GSMUA_Achr4P20790_001	Banana	extracellular	18.25	19.89
GSMUA_Achr2P18470_001	Banana	cytosol	19.95	19.25
GSMUA_Achr10P...	Banana	cytosol	24.09	19.04
GSMUA_Achr2P22090_001	Banana	cytosol	16.3	17.77
GSMUA_Achr4P09990_001	Banana	cytosol	18.25	17.48
GSMUA_Achr4P00520_001	Banana	cytosol	16.55	17.48
GSMUA_Achr7P20970_001	Banana	cytosol	16.79	17.47
GSMUA_Achr8P01380_001	Banana	cytosol	15.33	16.58
GSMUA_Achr3P23350_001	Banana	cytosol, extracellular	16.06	16.38
GSMUA_Achr9P30470_001	Banana	cytosol	15.33	16.11
GSMUA_Achr1P21630_001	Banana	cytosol	14.11	15.38
GSMUA_Achr11P...	Banana	cytosol	15.33	14.32
GSMUA_Achr10P...	Banana	nucleus	14.6	13.79
GSMUA_Achr8P17960_001	Banana	nucleus	13.38	13.22
GSMUA_Achr3P01570_001	Banana	golgi	15.33	12.88
GSMUA_Achr2P14920_001	Banana	mitochondrion	14.84	12.76
GSMUA_Achr4P03630_001	Banana	plasma membrane	26.28	12.72
GSMUA_Achr4P24130_001	Banana	nucleus	14.36	11.41

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr6G31190_001	EnsemblPlants:GSMUA_Achr6P31190_001	EnsemblPlants:GSMUA_Achr6T31190_001	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M0TBR4	PFAM:PF00646	PFAM:PF01344
PFscan:PS50181	PANTHER:PTHR24411	PANTHER:PTHR24411:SF27	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI0002958F3A	SEG:seg	:	:	:

Description

F-box/kelch-repeat protein At1g30090 [Source:GMGC_GENE;Acc:GSMUA_Achr6G31190_001]

Coordinates

chr6:+:31068560..31070098

Molecular Weight (calculated)

45916.5 Da

IEP (calculated)

7.998

GRAVY (calculated)

-0.116

Length

411 amino acids

Sequence
(BLAST)

001: MRRVRVSSHQ TPVHKLGDSQ MKLSPKFRLA MTPSPPPYHS PPASVEPAAA MESTALIPGL PDDIAFNCLL RLPVSSHVSC RLVCRRWHQL LANKECFFSQ
101: RKALGFHDPW LFTLAFHRCT GRIQWQVLDL THLSWHTIPA MPCRERVCPR GFGCIAIPPD GTLLVCGGLV SDMDCPLHLV LKYEIYKNRW TVMSRMLAAR
201: SFFAGGVIDG RIYVAGGYST DQFELDSAEV LDPVKGNWQP VASMGINMAA YDSAVLNGRL YVTEGCVWPF LSSPRGQVYD PEANNWEPMA VGMREGWTGS
301: GVVIYGHLFV ISEYERMRLK VHDVESDSWD TVEGSSMPER IHKPFSVTSV GSKIVVVGRG LHVAIGQVEN KGYCNSDGKM KKQKFSIQWQ EVDVPPEFCD
401: LTPSSARILY A

Best Arabidopsis Sequence Match ( AT1G30090.1 )
(BLAST)

001: MQRVRVSSQR AVVHKLGDSQ MTLSPKFRVA ASIQSTLFDR SSELELSLRG EPLIPGLPDD VALNCLLRVP VQSHVSSKSV CKRWHLLFGT KETFFAKRKE
101: FGFKDPWLFV VGFSRCTGKI QWKVLDLRNL TWHEIPAMPC RDKVCPHGFR SVSMPREGTM FVCGGMVSDS DCPLDLVLKY DMVKNHWTVT NKMITARSFF
201: ASGVIDGMIY AAGGNAADLY ELDCAEVLNP LDGNWRPVSN MVAHMASYDT AVLNGKLLVT EGWLWPFFVS PRGQVYDPRT DQWETMSMGL REGWTGTSVV
301: IYDRLFIVSE LERMKMKVYD PVTDSWETIN GPELPEQICR PFAVNCYGNR VYVVGRNLHL AVGNIWQSEN KFAVRWEVVE SPERYADITP SNSQILFA

Arabidopsis Description

F-box/kelch-repeat protein At1g30090 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z0]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.