Factsheet for GSMUA_Achr6P20750_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P16120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	68.46	69.9
GSMUA_Achr8P28270_001	Banana	cytosol	68.72	69.79
VIT_01s0010g03320.t01	Wine grape	cytosol	61.79	62.6
KRG97442	Soybean	cytosol, nucleus, peroxisome	58.46	61.62
Os02t0504900-01	Rice	cytosol	59.74	60.52
KRH31463	Soybean	cytosol	59.49	60.26
Zm00001d016553_P001	Maize	cytosol	55.38	59.34
KRH42654	Soybean	cytosol	58.97	59.28
EES06854	Sorghum	cytosol	57.69	58.75
Os04t0380300-01	Rice	plastid	56.15	58.4
TraesCS3A01G446400.1	Wheat	cytosol, plastid	56.67	57.4
TraesCS3D01G439000.1	Wheat	cytosol	56.15	57.03
TraesCS3B01G481500.1	Wheat	cytosol, plastid	55.9	56.77
CDY12647	Canola	cytosol	52.31	56.35
HORVU3Hr1G096780.1	Barley	cytosol, plastid	55.38	56.1
Bra033998.1-P	Field mustard	cytosol	51.79	55.8
Bra004227.1-P	Field mustard	cytosol	52.31	54.69
CDX96091	Canola	cytosol	52.31	54.69
CDY01812	Canola	cytosol	52.05	54.42
AT1G67480.1	Thale cress	cytosol, mitochondrion	52.05	53.99
OQU81371	Sorghum	mitochondrion	52.05	53.85
TraesCS2D01G279700.1	Wheat	mitochondrion	51.79	52.74
TraesCS2A01G280900.1	Wheat	mitochondrion	51.54	52.48
TraesCS2B01G298300.1	Wheat	mitochondrion	51.54	52.48
HORVU2Hr1G068790.2	Barley	cytosol	51.03	51.82
CDY64883	Canola	golgi, plastid	52.56	49.88
GSMUA_Achr7P08330_001	Banana	cytosol	24.62	24.37
GSMUA_Achr2P17100_001	Banana	cytosol, plastid	25.13	24.02
GSMUA_Achr3P29560_001	Banana	cytosol	23.85	22.63
GSMUA_Achr7P27010_001	Banana	cytosol	23.33	21.88
GSMUA_Achr6P24370_001	Banana	cytosol	19.23	21.61
GSMUA_AchrUn_...	Banana	cytosol	19.74	21.57
GSMUA_Achr6P31190_001	Banana	mitochondrion	22.56	21.41
GSMUA_Achr6P04050_001	Banana	cytosol	22.56	19.34
GSMUA_Achr2P18470_001	Banana	cytosol	21.03	19.25
GSMUA_Achr4P20790_001	Banana	extracellular	17.95	18.57
GSMUA_Achr1P21630_001	Banana	cytosol	16.41	16.98
GSMUA_Achr4P09990_001	Banana	cytosol	18.21	16.55
GSMUA_Achr10P...	Banana	cytosol	22.05	16.54
GSMUA_Achr3P23350_001	Banana	cytosol, extracellular	16.67	16.13
GSMUA_Achr8P01380_001	Banana	cytosol	15.64	16.05
GSMUA_Achr2P22090_001	Banana	cytosol	15.38	15.92
GSMUA_Achr9P30470_001	Banana	cytosol	15.64	15.6
GSMUA_Achr7P20970_001	Banana	cytosol	15.13	14.94
GSMUA_Achr4P00520_001	Banana	cytosol	14.62	14.65
GSMUA_Achr10P...	Banana	nucleus	15.9	14.25
GSMUA_Achr11P...	Banana	cytosol	15.9	14.09
GSMUA_Achr8P17960_001	Banana	nucleus	14.36	13.46
GSMUA_Achr2P14920_001	Banana	mitochondrion	15.9	12.97
GSMUA_Achr3P01570_001	Banana	golgi	15.9	12.68
GSMUA_Achr4P03630_001	Banana	plasma membrane	25.9	11.9
GSMUA_Achr4P24130_001	Banana	nucleus	15.64	11.8

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr6G20750_001	EnsemblPlants:GSMUA_Achr6P20750_001	EnsemblPlants:GSMUA_Achr6T20750_001	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M0T8S3	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24412
PANTHER:PTHR24412:SF377	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000296550B

Description

F-box/kelch-repeat protein At1g67480 [Source:GMGC_GENE;Acc:GSMUA_Achr6G20750_001]

Coordinates

chr6:+:15530465..15532594

Molecular Weight (calculated)

43029.3 Da

IEP (calculated)

8.005

GRAVY (calculated)

0.038

Length

390 amino acids

Sequence
(BLAST)

001: MPTLAVPGLL GFRRQFVDSE MQLNIPMQNS IATLQKVADG LITQMQMQMH PIIPGLPDDV AKTCLALVPR CDIPVMGAVC KTWRSFIQSK EFLTVRKDAK
101: QVEEWLFILT GDAQGRESHW EVWGGSGEKL KVLLPMPGPA KAGFGVAVLD AKLIIVGGYV VDAGTKCVSN DVYQYDSRLN RWSLLAKMSV ARHDFACDVV
201: NGLIYAVGGL GPNGENLSSV EVYDPDKNQW TLIESLRRPR WGCFACSFDG LLYVMGGRSS FTIGNSRFVD VYSPQRHSWH GMKIGCVMVT THAMLGKKLF
301: CMGWRNQRKL SIFDPVENSW HDVPVPVSGS SAIGFCFGIF GGKLLLFSVK NEPGYRTLSY DPDAPVGSEW QISSFKPWGG VCLCSVTIEA

Best Arabidopsis Sequence Match ( AT1G67480.3 )
(BLAST)

001: MQAFALSGKK RIVNHGMCFS KGNLDLGSRL SENFMDDPLI PGLPDDVAKQ CLALVPRARF PSMGSVCKKW RFVVQSKEFI TVRRLAGMLE EWLYVLTMNA
101: GGKDNRWEVM DCLGQKLSSL PPMPGPAKTG FKVVVVDGKL LVIAGCCMIN GSLVASADVY QYDTCLNSWS RLADLEVARY DFACAEVNGH VYVVGGHGVD
201: GESLSSAEVY DPETCTWTFI ESLRRPRWGC FASAFNGKLY VMGGRSNFTI GNSKLLDVYN TQCGSWHGSK NGLTMVTAHV EVGKKLFCID WKNHRKMSVF
301: NAEDETWEVV ALPLSGSSRA GFQFGKLSGK LLLFSSQEET GQCTLLYDPD ASPGTQWKTS EIKLSGSCVC SVTITA

Arabidopsis Description

F-box/kelch-repeat protein At1g67480 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAG8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.