Factsheet for GSMUA_Achr10P24460_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P04050_001	Banana	cytosol	65.77	75.16
VIT_18s0001g04730.t01	Wine grape	cytosol, plastid	56.73	61.84
TraesCS6B01G227500.1	Wheat	cytosol, peroxisome, plastid	53.46	60.43
HORVU6Hr1G052010.1	Barley	cytosol	52.5	59.35
EES05304	Sorghum	cytosol, peroxisome, plastid	52.31	59.26
Os02t0574900-01	Rice	cytosol	51.92	58.7
PGSC0003DMT400032733	Potato	cytosol, plastid	52.88	57.89
Solyc01g104980.2.1	Tomato	cytosol, plastid	52.88	57.89
VIT_12s0055g00910.t01	Wine grape	cytosol	52.88	57.41
Zm00001d050862_P001	Maize	cytosol, peroxisome, plastid	50.0	57.02
KRH53131	Soybean	cytosol	51.73	56.51
KRH58301	Soybean	cytosol	51.92	56.13
KRH42190	Soybean	cytosol, plastid	51.73	55.93
KRH16647	Soybean	cytosol, plastid	50.19	54.72
KRH18847	Soybean	cytosol	49.81	54.53
KRH62415	Soybean	cytosol	28.85	54.35
KRH72270	Soybean	cytosol	13.65	54.2
AT1G22040.1	Thale cress	plastid	49.42	54.11
CDY00415	Canola	mitochondrion	21.92	53.27
CDY01300	Canola	cytosol	22.69	52.68
Bra012304.1-P	Field mustard	cytosol	44.62	49.68
CDY04697	Canola	cytosol	20.96	48.88
CDY30645	Canola	nucleus	20.77	48.43
CDY01301	Canola	cytosol	13.85	45.86
GSMUA_Achr2P22090_001	Banana	cytosol	32.5	44.83
KRH55297	Soybean	cytosol	25.0	44.37
Bra031360.1-P	Field mustard	plastid	20.58	43.85
GSMUA_AchrUn_...	Banana	cytosol	18.65	27.17
GSMUA_Achr6P24370_001	Banana	cytosol	17.5	26.22
GSMUA_Achr3P29560_001	Banana	cytosol	19.62	24.82
GSMUA_Achr3P16120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	17.88	24.35
GSMUA_Achr6P31190_001	Banana	mitochondrion	19.04	24.09
GSMUA_Achr4P20790_001	Banana	extracellular	17.31	23.87
GSMUA_Achr7P08330_001	Banana	cytosol	18.08	23.86
GSMUA_Achr7P27010_001	Banana	cytosol	18.85	23.56
GSMUA_Achr2P17100_001	Banana	cytosol, plastid	18.27	23.28
GSMUA_Achr8P01380_001	Banana	cytosol	16.92	23.16
GSMUA_Achr8P28270_001	Banana	cytosol	16.73	22.66
GSMUA_Achr6P20750_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	16.54	22.05
GSMUA_Achr1P21630_001	Banana	cytosol	15.96	22.02
GSMUA_Achr4P09990_001	Banana	cytosol	17.69	21.45
GSMUA_Achr10P...	Banana	nucleus	16.73	20.0
GSMUA_Achr3P23350_001	Banana	cytosol, extracellular	15.38	19.85
GSMUA_Achr8P17960_001	Banana	nucleus	15.77	19.71
GSMUA_Achr7P20970_001	Banana	cytosol	14.81	19.49
GSMUA_Achr9P30470_001	Banana	cytosol	14.62	19.44
GSMUA_Achr2P18470_001	Banana	cytosol	15.58	19.01
GSMUA_Achr4P00520_001	Banana	cytosol	13.85	18.51
GSMUA_Achr11P...	Banana	cytosol	15.19	17.95
GSMUA_Achr2P14920_001	Banana	mitochondrion	16.15	17.57
GSMUA_Achr3P01570_001	Banana	golgi	16.35	17.38
GSMUA_Achr4P24130_001	Banana	nucleus	16.54	16.63
GSMUA_Achr4P03630_001	Banana	plasma membrane	17.88	10.95

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr10G24460_001	EnsemblPlants:GSMUA_Achr10P24460_001	EnsemblPlants:GSMUA_Achr10T24460_001	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M0RL21	PFAM:PF00646	PFAM:PF01344
PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF45	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI000294901F	SEG:seg	:	:	:

Description

F-box/kelch-repeat protein At1g22040 [Source:GMGC_GENE;Acc:GSMUA_Achr10G24460_001]

Coordinates

chr10:-:28909351..28911646

Molecular Weight (calculated)

58587.1 Da

IEP (calculated)

9.007

GRAVY (calculated)

-0.205

Length

520 amino acids

Sequence
(BLAST)

001: MLLGETDQRA VSRKLQQLSS HGGRRKRRRK IRGKKNQRRK FLVPDRYLKI EGFAGNWLPI LPQKPVEVYW ILMGSFLSVP ANKSRAGENS ETPRGDANKR
101: LRMSCYCDDK PRLIASLPDE ISMQILARLP RIYYLNVKLV SQRWKAAIIS DELFRLRAEL GVTEEWLYMM TKTGTDKFSW HALDPRLSKW QRLPPMPCLA
201: NEEERQRVLP RLRMWSVVGS SIKLADLIRG WLGRRDNLDQ MSFCGCAVGA VGGCLYVLGG FSRASAIDCV WRYDPCLNLW EEVNSMISAR AFCKTCLLND
301: KLYAVGGVIR GRNGLTPLHS AEAFDPATGL WTELPSMPFL KTRVFPLAFL ADMVKPIATG MASYRGRLCV PQSLYSWPFF FDIGGEVYDP ETGSWVDMPP
401: GMGDGWPARQ AGTKLGAVVN GDLYALDPSR YLDSAQIKVY DEEEDAWRVV AERVPLHCFS DSESPYLLAG FLGKLHVITK DASDHIVIME ADSRRCRGSN
501: VIAAKDFGAA ELVGCQVLDL

Best Arabidopsis Sequence Match ( AT1G22040.1 )
(BLAST)

001: MGSVMSLSCS KRKATSQDVE CSSESRKRRK ISSENDEEEC CRLIPSLPDE LSIQILARLP RICYSSVRLV SRRWRSAVST SEVYSLRKEL GRTEEWLYVL
101: TKGHEDKLLW YALDPVSTKW QRLPPMPVVV YEEESRKSLS GLWNMITPSF NVGAIVRSFL GRRDSSEQMP FCGCAIGAVD GGLYVIGGLS RSKTVSCVWR
201: FDPILNSWSE VSSMLASRAY SKTGVLNKKL YVVGGVDRGR GGLSPLQSAE VYDPSTDAWS EVPSMPFSKA QVLPNAFLAD LLKPIATGMT CYNGRLCVPQ
301: SLYSWPFFVD VGGEVYDPET NLWVEMPSGM GEGWPARQAG TKLSVVVDGE LYAFDPSSSM ENGKIKVYDQ KEDTWKVVIG EVPVYDLTDS ESPYLLAGFH
401: GKLHFITRDP NHNVTVLRAD VPNIPVSSSS SSSSSVSIPH LKTNAPNKSD TVTWKLIATK DFGAAELVSC QVIDI

Arabidopsis Description

F-box/kelch-repeat protein At1g22040 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.