Factsheet for VIT_12s0055g00910.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g04730.t01	Wine grape	cytosol, plastid	70.15	70.44
KRH42190	Soybean	cytosol, plastid	69.52	69.23
KRH58301	Soybean	cytosol	68.89	68.61
Solyc01g104980.2.1	Tomato	cytosol, plastid	66.6	67.16
PGSC0003DMT400032733	Potato	cytosol, plastid	66.18	66.74
GSMUA_Achr6P04050_001	Banana	cytosol	59.71	62.86
TraesCS6B01G227500.1	Wheat	cytosol, peroxisome, plastid	57.2	59.57
EES05304	Sorghum	cytosol, peroxisome, plastid	56.16	58.61
HORVU6Hr1G052010.1	Barley	cytosol	56.16	58.48
Os02t0574900-01	Rice	cytosol	56.16	58.48
Os10t0363600-01	Rice	cytosol, plastid	57.83	58.32
TraesCS7A01G020100.1	Wheat	cytosol, plastid	55.11	57.89
Zm00001d050862_P001	Maize	cytosol, peroxisome, plastid	54.91	57.68
TraesCS7D01G016400.1	Wheat	cytosol, plastid	54.7	57.46
KXG24326	Sorghum	cytosol	55.95	57.27
TraesCS4A01G472100.1	Wheat	cytosol	54.7	57.21
HORVU7Hr1G002140.2	Barley	mitochondrion	55.32	55.56
Zm00001d049632_P001	Maize	cytosol	54.07	54.07
GSMUA_Achr10P...	Banana	cytosol	57.41	52.88
GSMUA_Achr2P22090_001	Banana	cytosol	36.95	46.95
VIT_04s0008g02380.t01	Wine grape	cytosol, peroxisome, plastid	21.71	28.11
VIT_11s0016g05050.t01	Wine grape	cytosol	25.05	28.04
VIT_07s0151g00770.t01	Wine grape	cytosol	19.83	27.54
VIT_10s0003g03730.t01	Wine grape	cytosol	13.15	27.39
VIT_15s0046g02790.t01	Wine grape	cytosol	15.66	27.17
VIT_06s0004g00860.t01	Wine grape	cytosol	23.8	26.09
VIT_15s0046g02710.t01	Wine grape	cytosol	19.0	25.35
VIT_01s0010g03320.t01	Wine grape	cytosol	19.62	24.42
VIT_16s0039g01470.t01	Wine grape	cytosol	17.95	22.4
VIT_17s0000g05920.t01	Wine grape	cytosol	19.83	21.44
VIT_06s0004g02980.t01	Wine grape	cytosol	16.28	21.43
VIT_14s0068g02150.t01	Wine grape	cytosol	18.79	18.87
VIT_01s0026g02080.t01	Wine grape	nucleus	19.0	16.82

Protein Annotations

EntrezGene:100245120	wikigene:100245120	Gene3D:2.120.10.80	MapMan:35.1	EMBL:AM459239	ProteinID:CAN63480
ProteinID:CAN63480.1	ProteinID:CCB46161	ProteinID:CCB46161.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6H1M9
EMBL:FN595228	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	EntrezGene:LOC100245120	wikigene:LOC100245120	PFAM:PF00646	PFAM:PF01344
PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF45	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI000198464E	ArrayExpress:VIT_12s0055g00910	EnsemblPlantsGene:VIT_12s0055g00910	EnsemblPlants:VIT_12s0055g00910.t01	unigene:Vvi.12199
RefSeq:XP_002271882	RefSeq:XP_002271882.1	RefSeq:XP_010657600.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:14331303..14334582

Molecular Weight (calculated)

53144.5 Da

IEP (calculated)

5.762

GRAVY (calculated)

-0.153

Length

479 amino acids

Sequence
(BLAST)

001: MGSALSLNGS KTRFEEHSEV SVDETCKRQR LSSSISEENE NVRLIPNLPD EISFQILARV PRIFYLNVRL VSRSWKGAIM STELFNLRKE LGTTEEWLYI
101: LTKIKDDKLL WYSLDPLSRR WQRLPPMPNV AHEDGYRKGF SGLRMLNMVG SSNKIADVIR GWLGRRDELD RIPFCGSAIG TVDGCLYVLG GFSRASALTS
201: VWRYDPVQNG WSEVSPMSIG RAYCKTGVLN NKLYVVGGVT RGRGGLIPLQ SAEVFDPRTG VWSQIPSMPF AKAQVLPTAF LADLLKPIAT GMTSYKGKLF
301: VPQSLYYWPF FVDVGGEVYD PETNSWFEMP VGMGEGWPAR QAGTKLGAIV DDELYALDPS SSADIATIKV YDYQCDSWKV VSTDVPIHDF AEAESPYLLA
401: SLLGKLHVIT KDANNNFTVL QANMQNHLHS FPLTPLSPLG NNSSEQTESA AESETDVWKV IAARSAGACE LVSCQILGI

Best Arabidopsis Sequence Match ( AT1G22040.1 )
(BLAST)

001: MGSVMSLSCS KRKATSQDVE CSSESRKRRK ISSENDEEEC CRLIPSLPDE LSIQILARLP RICYSSVRLV SRRWRSAVST SEVYSLRKEL GRTEEWLYVL
101: TKGHEDKLLW YALDPVSTKW QRLPPMPVVV YEEESRKSLS GLWNMITPSF NVGAIVRSFL GRRDSSEQMP FCGCAIGAVD GGLYVIGGLS RSKTVSCVWR
201: FDPILNSWSE VSSMLASRAY SKTGVLNKKL YVVGGVDRGR GGLSPLQSAE VYDPSTDAWS EVPSMPFSKA QVLPNAFLAD LLKPIATGMT CYNGRLCVPQ
301: SLYSWPFFVD VGGEVYDPET NLWVEMPSGM GEGWPARQAG TKLSVVVDGE LYAFDPSSSM ENGKIKVYDQ KEDTWKVVIG EVPVYDLTDS ESPYLLAGFH
401: GKLHFITRDP NHNVTVLRAD VPNIPVSSSS SSSSSVSIPH LKTNAPNKSD TVTWKLIATK DFGAAELVSC QVIDI

Arabidopsis Description

F-box/kelch-repeat protein At1g22040 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.