Factsheet for VIT_18s0001g04730.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53131	Soybean	cytosol	76.1	76.26
KRH62415	Soybean	cytosol	43.82	75.72
KRH18847	Soybean	cytosol	71.7	72.0
KRH16647	Soybean	cytosol, plastid	71.28	71.28
VIT_12s0055g00910.t01	Wine grape	cytosol	70.44	70.15
AT1G22040.1	Thale cress	plastid	67.51	67.79
GSMUA_Achr6P04050_001	Banana	cytosol	64.36	67.47
CDY01300	Canola	cytosol	29.77	63.39
CDY00415	Canola	mitochondrion	27.88	62.15
EES05304	Sorghum	cytosol, peroxisome, plastid	59.12	61.44
TraesCS6B01G227500.1	Wheat	cytosol, peroxisome, plastid	58.91	61.09
Zm00001d050862_P001	Maize	cytosol, peroxisome, plastid	57.65	60.31
Os02t0574900-01	Rice	cytosol	58.07	60.22
HORVU6Hr1G052010.1	Barley	cytosol	57.86	60.0
CDY30645	Canola	nucleus	27.46	58.74
Bra012304.1-P	Field mustard	cytosol	57.23	58.46
KXG24326	Sorghum	cytosol	57.02	58.12
Os10t0363600-01	Rice	cytosol, plastid	57.86	58.11
CDY04697	Canola	cytosol	26.83	57.4
TraesCS7D01G016400.1	Wheat	cytosol, plastid	54.3	56.8
GSMUA_Achr10P...	Banana	cytosol	61.84	56.73
TraesCS7A01G020100.1	Wheat	cytosol, plastid	54.09	56.58
Bra031360.1-P	Field mustard	plastid	28.93	56.56
TraesCS4A01G472100.1	Wheat	cytosol	53.88	56.11
KRH55297	Soybean	cytosol	34.38	55.97
Zm00001d049632_P001	Maize	cytosol	54.93	54.7
HORVU7Hr1G002140.2	Barley	mitochondrion	54.09	54.09
CDY01301	Canola	cytosol	16.56	50.32
GSMUA_Achr2P22090_001	Banana	cytosol	38.36	48.54
VIT_11s0016g05050.t01	Wine grape	cytosol	25.79	28.74
VIT_04s0008g02380.t01	Wine grape	cytosol, peroxisome, plastid	22.01	28.38
VIT_07s0151g00770.t01	Wine grape	cytosol	20.13	27.83
VIT_06s0004g00860.t01	Wine grape	cytosol	25.37	27.69
VIT_10s0003g03730.t01	Wine grape	cytosol	13.0	26.96
VIT_15s0046g02790.t01	Wine grape	cytosol	15.3	26.45
VIT_01s0010g03320.t01	Wine grape	cytosol	20.75	25.71
VIT_15s0046g02710.t01	Wine grape	cytosol	18.87	25.07
VIT_16s0039g01470.t01	Wine grape	cytosol	18.45	22.92
VIT_06s0004g02980.t01	Wine grape	cytosol	16.77	21.98
VIT_17s0000g05920.t01	Wine grape	cytosol	19.5	20.99
VIT_14s0068g02150.t01	Wine grape	cytosol	18.45	18.45
VIT_01s0026g02080.t01	Wine grape	nucleus	18.87	16.64

Protein Annotations

EntrezGene:100248808	wikigene:100248808	Gene3D:2.120.10.80	MapMan:35.1	ProteinID:CCB45545	ProteinID:CCB45545.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6H0U8	EMBL:FN595227	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	EntrezGene:LOC100248808
wikigene:LOC100248808	PFAM:PF00646	PFAM:PF01344	PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF39
SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00015C825F	ArrayExpress:VIT_18s0001g04730
EnsemblPlantsGene:VIT_18s0001g04730	EnsemblPlants:VIT_18s0001g04730.t01	unigene:Vvi.18945	RefSeq:XP_002285816	RefSeq:XP_002285816.1	SEG:seg

Description

No Description!

Coordinates

chr18:-:3963413..3965554

Molecular Weight (calculated)

53071.5 Da

IEP (calculated)

5.101

GRAVY (calculated)

-0.147

Length

477 amino acids

Sequence
(BLAST)

001: MGSFLSLAGP KSRTSEHDEG SQHETCKRQR MSSSFNEENP RLIPSLPDEI SILILARLPR ICYFDLRLVS RNWKATITSP ELFNLRKELG KTEEWLYILT
101: KVEEDRLLWH ALDPLSRRWQ RLPSMPNVVY EEESRKVSSG LWMWNMVGPS IKIADVIRGW LGRKDTLDQM PFCGCAIGAV DGCLYVLGGF SSASTMRCVW
201: RFDPILNAWS EVTPMSTGRA YCKTGILNDK LYVVGGVSRG RGGLTPLQSA EVFDPCTDTW SQIPSMPFSR AQVLPTAFLA DMLKPIATGM TSYMGRLCVP
301: QSLYSWPFFV DVGGEIYDPE TNSWVEMPIG MGDGWPARQA GTKLSVVVDG ELYAFDPSSS LDSGNIKVYD QKEDAWKVVI GKVPICDFTD SESPYLLAGF
401: HGKLHIITKD ANHDIAVLQA DLRDNLGFPP STSPSCSAAS SHEHSDLLAE TETVVWKVIA TRDFGTAELV SCQVLDI

Best Arabidopsis Sequence Match ( AT1G22040.1 )
(BLAST)

001: MGSVMSLSCS KRKATSQDVE CSSESRKRRK ISSENDEEEC CRLIPSLPDE LSIQILARLP RICYSSVRLV SRRWRSAVST SEVYSLRKEL GRTEEWLYVL
101: TKGHEDKLLW YALDPVSTKW QRLPPMPVVV YEEESRKSLS GLWNMITPSF NVGAIVRSFL GRRDSSEQMP FCGCAIGAVD GGLYVIGGLS RSKTVSCVWR
201: FDPILNSWSE VSSMLASRAY SKTGVLNKKL YVVGGVDRGR GGLSPLQSAE VYDPSTDAWS EVPSMPFSKA QVLPNAFLAD LLKPIATGMT CYNGRLCVPQ
301: SLYSWPFFVD VGGEVYDPET NLWVEMPSGM GEGWPARQAG TKLSVVVDGE LYAFDPSSSM ENGKIKVYDQ KEDTWKVVIG EVPVYDLTDS ESPYLLAGFH
401: GKLHFITRDP NHNVTVLRAD VPNIPVSSSS SSSSSVSIPH LKTNAPNKSD TVTWKLIATK DFGAAELVSC QVIDI

Arabidopsis Description

F-box/kelch-repeat protein At1g22040 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.