Factsheet for VIT_15s0046g02790.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0046g02710.t01	Wine grape	cytosol	96.38	74.09
KRH48153	Soybean	cytosol	61.96	47.24
KRH48154	Soybean	cytosol	60.14	45.11
KRH48156	Soybean	cytosol	58.33	44.48
KRH65052	Soybean	cytosol	50.0	43.12
KRH65051	Soybean	cytosol	50.36	42.38
PGSC0003DMT400000478	Potato	nucleus	59.42	41.1
Solyc01g094520.2.1	Tomato	nucleus	59.06	40.85
AT3G61350.2	Thale cress	cytosol	51.45	39.66
CDY58793	Canola	cytosol	49.64	38.16
CDY51562	Canola	cytosol	48.91	37.6
Bra003447.1-P	Field mustard	cytosol	47.46	36.49
EES06149	Sorghum	cytosol	43.12	34.39
HORVU6Hr1G007030.1	Barley	cytosol	42.75	34.1
GSMUA_Achr4P20790_001	Banana	extracellular	46.38	33.95
TraesCS6A01G037900.1	Wheat	cytosol	44.2	33.61
Zm00001d014986_P001	Maize	cytosol	43.84	33.33
Os02t0114600-02	Rice	cytosol	43.48	33.33
TraesCS6D01G043400.1	Wheat	cytosol	43.48	31.41
TraesCS6B01G052900.2	Wheat	cytosol	43.48	31.41
VIT_07s0151g00770.t01	Wine grape	cytosol	28.26	22.61
VIT_04s0008g02380.t01	Wine grape	cytosol, peroxisome, plastid	26.45	19.73
VIT_01s0010g03320.t01	Wine grape	cytosol	26.81	19.22
VIT_11s0016g05050.t01	Wine grape	cytosol	28.26	18.22
VIT_06s0004g00860.t01	Wine grape	cytosol	27.9	17.62
VIT_12s0055g00910.t01	Wine grape	cytosol	27.17	15.66
VIT_18s0001g04730.t01	Wine grape	cytosol, plastid	26.45	15.3
VIT_06s0004g02980.t01	Wine grape	cytosol	19.57	14.84
VIT_17s0000g05920.t01	Wine grape	cytosol	23.19	14.45
VIT_16s0039g01470.t01	Wine grape	cytosol	19.57	14.06
VIT_10s0003g03730.t01	Wine grape	cytosol	11.59	13.91
VIT_01s0026g02080.t01	Wine grape	nucleus	21.01	10.72
VIT_14s0068g02150.t01	Wine grape	cytosol	18.12	10.48

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	ProteinID:CCB62416	ProteinID:CCB62416.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
UniProt:F6I620	EMBL:FN596755	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414
PANTHER:PTHR24414:SF40	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00015CA915
ArrayExpress:VIT_15s0046g02790	EnsemblPlantsGene:VIT_15s0046g02790	EnsemblPlants:VIT_15s0046g02790.t01	RefSeq:XP_003633979	RefSeq:XP_003633979.1	:

Description

No Description!

Coordinates

chr15:+:19522500..19523836

Molecular Weight (calculated)

31186.2 Da

IEP (calculated)

6.766

GRAVY (calculated)

-0.268

Length

276 amino acids

Sequence
(BLAST)

001: MELLESGLEG ISRIELAQSP LICGLPDDIA LICLARVPRK YHTLLKCVSR RWRDLVSSEE WHAYRQKHKL DEPWIYALCR DKFKRVCCYV LDPYSTRRSW
101: KLIEGFPPRS LKRKGMSFEV LGKKVYLLGG CGWLEDATDE VYSYDASTNR WSEAAPLSTA RCYFACEVLN GKIYAIGGLG SKSNDPHSWD TYNPHTNSWK
201: SHSDPNIVPD IEDTIVLDEK IYIRCGTSAL TSHVYVVVYN PSHGTWQHAD ADMVLGWQGP AVVVDGILCV GPEVGN

Best Arabidopsis Sequence Match ( AT3G61350.1 )
(BLAST)

001: MACIVEDPQR AGQSNETQIA LISGVPDDIS KSCLARVPRE YHMAMKCVSR RWRDFVCSDE MCDYRNEFNL AESWIYALCR DISGGVFLHM LNPFSSRRSW
101: KRINDYPYIP MREGMGFAVL GKRLFVLGGC GWLEDATDEI YCYDAAMNTW FDVVPPLSTK RCYFACETLD GKIIAIGGLG LNPNAKRTWD IYDPLTRTCK
201: SCSDVNIVPE MEDSFVMDGR IYIRGGVGGS STAVYSASSG IWERMDDDMA SGWRGPAVVV AGDLYVLDQT FGAKLTMWCK DTRMWIHIGK LSQLVMKQPC
301: RLVSIGNSIF VIGKDCSTVV IDVENVRKNK MNGVMVCSSI PKTWDDDIDV ISCKSVAI

Arabidopsis Description

SKIP4F-box/kelch-repeat protein SKIP4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.