Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G007080.1 | Barley | cytosol | 23.12 | 91.95 |
| TraesCS6A01G037900.1 | Wheat | cytosol | 92.77 | 88.43 |
| TraesCS6D01G043400.1 | Wheat | cytosol | 92.49 | 83.77 |
| TraesCS6B01G052900.2 | Wheat | cytosol | 91.91 | 83.25 |
| Os02t0114600-02 | Rice | cytosol | 79.77 | 76.67 |
| EES06149 | Sorghum | cytosol | 76.01 | 76.01 |
| Zm00001d014986_P001 | Maize | cytosol | 74.28 | 70.8 |
| GSMUA_Achr4P20790_001 | Banana | extracellular | 57.8 | 53.05 |
| VIT_15s0046g02710.t01 | Wine grape | cytosol | 48.55 | 46.8 |
| VIT_15s0046g02790.t01 | Wine grape | cytosol | 34.1 | 42.75 |
| KRH48153 | Soybean | cytosol | 43.93 | 41.99 |
| PGSC0003DMT400000478 | Potato | nucleus | 45.66 | 39.6 |
| Solyc01g094520.2.1 | Tomato | nucleus | 45.38 | 39.35 |
| KRH48154 | Soybean | cytosol | 41.33 | 38.86 |
| KRH48156 | Soybean | cytosol | 40.46 | 38.67 |
| KRH65052 | Soybean | cytosol | 35.55 | 38.44 |
| AT3G61350.2 | Thale cress | cytosol | 38.73 | 37.43 |
| CDY58793 | Canola | cytosol | 38.15 | 36.77 |
| CDY51562 | Canola | cytosol | 37.57 | 36.21 |
| Bra003447.1-P | Field mustard | cytosol | 37.28 | 35.93 |
| KRH65051 | Soybean | cytosol | 32.95 | 34.76 |
| HORVU2Hr1G068790.2 | Barley | cytosol | 23.12 | 20.83 |
| HORVU3Hr1G096780.1 | Barley | cytosol, plastid | 22.83 | 20.52 |
| HORVU4Hr1G074720.7 | Barley | plasma membrane | 25.72 | 20.27 |
| HORVU2Hr1G057150.1 | Barley | cytosol | 10.4 | 19.35 |
| HORVU2Hr1G057140.1 | Barley | cytosol | 10.4 | 19.35 |
| HORVU6Hr1G037850.2 | Barley | plastid | 23.7 | 19.25 |
| HORVU6Hr1G052010.1 | Barley | cytosol | 24.86 | 18.7 |
| HORVU1Hr1G035200.1 | Barley | plasma membrane | 25.14 | 18.32 |
| HORVU3Hr1G116690.2 | Barley | mitochondrion | 25.14 | 17.86 |
| HORVU7Hr1G002140.2 | Barley | mitochondrion | 23.41 | 16.98 |
| HORVU6Hr1G075590.1 | Barley | cytosol, nucleus, plastid | 20.23 | 16.47 |
| HORVU4Hr1G075310.1 | Barley | cytosol | 20.81 | 16.4 |
| HORVU2Hr1G103880.2 | Barley | cytosol | 18.5 | 14.35 |
| HORVU7Hr1G000010.5 | Barley | cytosol | 17.92 | 14.16 |
| HORVU7Hr1G000070.1 | Barley | cytosol | 17.92 | 11.81 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009409 | GO:GO:0009628 | EnsemblPlantsGene:HORVU6Hr1G007030 |
| EnsemblPlants:HORVU6Hr1G007030.1 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | UniProt:M0Z1G0 |
| PFAM:PF00646 | PFAM:PF01344 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF40 | SMART:SM00256 | SMART:SM00612 |
| SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI000296E343 | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:14499960..14506518
Molecular Weight (calculated)
39251.3 Da
IEP (calculated)
6.834
GRAVY (calculated)
-0.184
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MESADIQTQL IHGLPDEVAL LCLARVPRQY HNALRRVSRG WKALLCSEEW HSYRKRNNLD ESWIYVICRG TGFKCYVLVP DPTTRSLKVI QVMEPPCSRR
101: EGVSIETLDR RLFLMGGCSC LKDANDEVYC YDAASNHWSI AAPMPTARCY FVSASLNDKI YVTGGFGLTD KSPNSWDIYD KATDSWRSHK NPMLTPDIVK
201: FVALDDELVT IHKASWNRMY FAGIYDPVDQ TWRGKENEIA LCWSGPTVVV EGTLYMLDQS LGTKLMMWIN ETKEWVMVGR LSDKLTRPPC ELVAIGRKIY
301: VIGRGLSTVT IDMDTAARVD GFLVSSSTAP LMEHDFPPEK CRVITI
101: EGVSIETLDR RLFLMGGCSC LKDANDEVYC YDAASNHWSI AAPMPTARCY FVSASLNDKI YVTGGFGLTD KSPNSWDIYD KATDSWRSHK NPMLTPDIVK
201: FVALDDELVT IHKASWNRMY FAGIYDPVDQ TWRGKENEIA LCWSGPTVVV EGTLYMLDQS LGTKLMMWIN ETKEWVMVGR LSDKLTRPPC ELVAIGRKIY
301: VIGRGLSTVT IDMDTAARVD GFLVSSSTAP LMEHDFPPEK CRVITI
001: MACIVEDPQR AGQSNETQIA LISGVPDDIS KSCLARVPRE YHMAMKCVSR RWRDFVCSDE MCDYRNEFNL AESWIYALCR DISGGVFLHM LNPFSSRRSW
101: KRINDYPYIP MREGMGFAVL GKRLFVLGGC GWLEDATDEI YCYDAAMNTW FDVVPPLSTK RCYFACETLD GKIIAIGGLG LNPNAKRTWD IYDPLTRTCK
201: SCSDVNIVPE MEDSFVMDGR IYIRGGVGGS STAVYSASSG IWERMDDDMA SGWRGPAVVV AGDLYVLDQT FGAKLTMWCK DTRMWIHIGK LSQLVMKQPC
301: RLVSIGNSIF VIGKDCSTVV IDVENVRKNK MNGVMVCSSI PKTWDDDIDV ISCKSVAI
101: KRINDYPYIP MREGMGFAVL GKRLFVLGGC GWLEDATDEI YCYDAAMNTW FDVVPPLSTK RCYFACETLD GKIIAIGGLG LNPNAKRTWD IYDPLTRTCK
201: SCSDVNIVPE MEDSFVMDGR IYIRGGVGGS STAVYSASSG IWERMDDDMA SGWRGPAVVV AGDLYVLDQT FGAKLTMWCK DTRMWIHIGK LSQLVMKQPC
301: RLVSIGNSIF VIGKDCSTVV IDVENVRKNK MNGVMVCSSI PKTWDDDIDV ISCKSVAI
Arabidopsis Description
SKIP4F-box/kelch-repeat protein SKIP4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.