Factsheet for HORVU2Hr1G103880.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G462600.1	Wheat	cytosol	95.29	94.65
TraesCS2B01G484200.1	Wheat	cytosol	95.07	94.43
TraesCS2D01G463000.1	Wheat	cytosol	93.95	93.74
KXG27134	Sorghum	cytosol	52.91	87.73
Os04t0619300-01	Rice	cytosol, extracellular	86.32	80.88
Zm00001d026321_P001	Maize	cytosol	80.72	80.36
OQU82347	Sorghum	mitochondrion	83.63	79.03
Zm00001d002284_P003	Maize	mitochondrion	83.41	76.23
GSMUA_Achr3P23350_001	Banana	cytosol, extracellular	62.11	68.73
VIT_16s0039g01470.t01	Wine grape	cytosol	58.74	68.23
GSMUA_Achr9P30470_001	Banana	cytosol	56.73	64.71
Solyc11g069320.1.1	Tomato	plastid	31.61	64.68
KRH26429	Soybean	cytosol	49.78	60.99
KRH22905	Soybean	cytosol	50.22	57.58
GSMUA_Achr11P...	Banana	cytosol	56.73	57.5
PGSC0003DMT400020936	Potato	cytosol	49.1	56.44
KRH29930	Soybean	cytosol	43.72	56.2
KRH24879	Soybean	cytosol	49.55	55.67
Zm00001d007538_P001	Maize	cytosol	36.77	55.22
AT5G60570.2	Thale cress	cytosol	47.53	53.94
CDX80156	Canola	cytosol	45.29	53.3
KRH12864	Soybean	cytosol, plasma membrane	38.79	53.23
Bra002471.1-P	Field mustard	cytosol	44.62	53.07
CDY31534	Canola	cytosol	44.62	53.07
Zm00001d019862_P001	Maize	cytosol	73.32	47.81
HORVU2Hr1G057140.1	Barley	cytosol	19.51	46.77
HORVU2Hr1G057150.1	Barley	cytosol	19.51	46.77
HORVU6Hr1G075590.1	Barley	cytosol, nucleus, plastid	43.95	46.12
HORVU4Hr1G075310.1	Barley	cytosol	43.05	43.74
HORVU7Hr1G000010.5	Barley	cytosol	34.98	35.62
HORVU7Hr1G000070.1	Barley	cytosol	36.1	30.67
HORVU4Hr1G074720.7	Barley	plasma membrane	21.75	22.1
HORVU3Hr1G116690.2	Barley	mitochondrion	22.2	20.33
HORVU6Hr1G037850.2	Barley	plastid	18.61	19.48
HORVU1Hr1G035200.1	Barley	plasma membrane	20.63	19.37
HORVU6Hr1G052010.1	Barley	cytosol	19.73	19.13
HORVU3Hr1G096780.1	Barley	cytosol, plastid	16.37	18.96
HORVU6Hr1G007030.1	Barley	cytosol	14.35	18.5
HORVU6Hr1G007080.1	Barley	cytosol	3.59	18.39
HORVU7Hr1G002140.2	Barley	mitochondrion	19.06	17.82
HORVU2Hr1G068790.2	Barley	cytosol	14.8	17.19

Protein Annotations

EnsemblPlants:HORVU2Hr1G103880.2	EnsemblPlantsGene:HORVU2Hr1G103880	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF150	PFAM:PF01344
SEG:seg	SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI000296860B	UniProt:M0XYL7	MapMan:35.1

Description

No Description!

Coordinates

chrchr2H:+:701030397..701035024

Molecular Weight (calculated)

49483.7 Da

IEP (calculated)

6.647

GRAVY (calculated)

-0.247

Length

446 amino acids

Sequence
(BLAST)

001: MEDLQDCNSK SLVAVPGSLV LHVFRLLGQQ DNSWQKYALA YFLLVRNEYF PREPRKHSAV NGQLVHCCVS SDLGSKEVEV EEQNAVVKTQ SGGDSSSNGS
101: NDCFLPGLHD DLAQDSLAWT SRSDYPSLSC LNKKFSTLVN GGYLYKLRRK YGIVEHWVYL ACSLMPWEAF DPSRNRWMRL PRMPCDDCFS CADKESLAVG
201: TQLLVFGREY AGLAIWMYNL LTRHWSRCTP MNLPRCLFAS GSCGEIAIVA GGCNGTGQVL RSAELYNSEA GQWETLPDMN LPRRLSSGFF MDGKFYVIGG
301: VTSEGHSLTC GEEYDLDTRT WRRIHDMYPG GTSASQSPPL IAVVNNQLYA ADQSTNVVKK YDKASNTWNI VKPLPVRADS SNGWGLAFKG CGDRLLVIGG
401: HRGPRGEVIL LHSWCPEDGN GVADWEVLSV KERAGVFVYN CAIMGC

Best Arabidopsis Sequence Match ( AT2G02870.2 )
(BLAST)

001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC

Arabidopsis Description

SKIP11F-box/kelch-repeat protein SKIP11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L736]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.