Factsheet for HORVU6Hr1G037850.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G167900.1	Wheat	plastid	93.9	94.56
TraesCS6A01G175700.1	Wheat	plastid	93.19	93.85
TraesCS6B01G209700.1	Wheat	cytosol	91.55	92.2
Os02t0202900-00	Rice	cytosol	77.0	75.23
Zm00001d015744_P001	Maize	plastid	73.0	74.4
KXG29748	Sorghum	plastid	74.88	73.33
GSMUA_Achr7P08330_001	Banana	cytosol	54.46	58.88
GSMUA_Achr2P17100_001	Banana	cytosol, plastid	54.23	56.62
HORVU4Hr1G074720.7	Barley	plasma membrane	50.23	48.75
HORVU1Hr1G035200.1	Barley	plasma membrane	50.47	45.26
HORVU3Hr1G116690.2	Barley	mitochondrion	50.23	43.94
HORVU7Hr1G002140.2	Barley	mitochondrion	27.46	24.53
HORVU6Hr1G007030.1	Barley	cytosol	19.25	23.7
HORVU3Hr1G096780.1	Barley	cytosol, plastid	21.36	23.64
HORVU2Hr1G068790.2	Barley	cytosol	21.13	23.44
HORVU6Hr1G052010.1	Barley	cytosol	23.71	21.96
HORVU2Hr1G057150.1	Barley	cytosol	9.15	20.97
HORVU2Hr1G057140.1	Barley	cytosol	9.15	20.97
HORVU4Hr1G075310.1	Barley	cytosol	20.42	19.82
HORVU6Hr1G007080.1	Barley	cytosol	3.99	19.54
HORVU2Hr1G103880.2	Barley	cytosol	19.48	18.61
HORVU6Hr1G075590.1	Barley	cytosol, nucleus, plastid	18.54	18.59
HORVU7Hr1G000010.5	Barley	cytosol	18.78	18.26
HORVU7Hr1G000070.1	Barley	cytosol	18.54	15.05

Protein Annotations

Gene3D:2.120.10.80	MapMan:9.2.1.1.3	EMBL:AK361583	EMBL:AK366815	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
UniProt:F2DCG6	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU6Hr1G037850	EnsemblPlants:HORVU6Hr1G037850.2
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344
PANTHER:PTHR24412	PANTHER:PTHR24412:SF234	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002005D96
SEG:seg	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DCG6]

Coordinates

chrchr6H:+:190910699..190915329

Molecular Weight (calculated)

46440.9 Da

IEP (calculated)

10.178

GRAVY (calculated)

-0.195

Length

426 amino acids

Sequence
(BLAST)

001: MDRRIQAPLV DSSACLCRAE RAAGVASAGR HVPRSRPCVQ SSLRASIHPL SDKRSSRADR RSDGQRPLLP GLPDDLAIAC LIRVPRGDHC KLKLVCRRWL
101: RLLAGNYFYA LRGRLGLAEQ WLYAFRSDGD GRVSWDVLDP AARGGAAWRE MPPVPGEYAS AAGFSCAVLG GCHLYLLGGR DPRRGAMRRV VFYSARSNRW
201: HRAPDMLRRR HCFGTCVMGN RLYVAGGESG GGGLRSAEVF DPAKNRWSLV SDMARALVPF VSVVHGGRWY VKGLGAERQV LSQVYTPEMD KWSTVATLDS
301: MVTGWRSPSA CIDGRLYAAD CKDGCRLRAY DEAADSWSGC ASSGNHLGSS HALEAVAMVT LRGKLCVVRN DMSVLVVDVA AGAGNQRWET LAGKGQIKSF
401: VTNLLASIAG RSRAKNRVLH CQVLEA

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.