CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015744_P001	Maize	plastid	88.05	91.63
TraesCS6D01G167900.1	Wheat	plastid	74.02	76.12
TraesCS6A01G175700.1	Wheat	plastid	73.56	75.65
Os02t0202900-00	Rice	cytosol	75.63	75.46
HORVU6Hr1G037850.2	Barley	plastid	73.33	74.88
TraesCS6B01G209700.1	Wheat	cytosol	71.49	73.52
GSMUA_Achr7P08330_001	Banana	cytosol	52.87	58.38
GSMUA_Achr2P17100_001	Banana	cytosol, plastid	54.02	57.6
EER91632	Sorghum	plastid	51.72	51.49
EER95442	Sorghum	mitochondrion	47.36	47.03
EER97991	Sorghum	mitochondrion	29.43	30.92
EER90147	Sorghum	cytosol	24.37	26.97
EES06854	Sorghum	cytosol	21.61	24.54
KXG24326	Sorghum	cytosol	25.98	24.15
EES06149	Sorghum	cytosol	18.85	23.7
EES05304	Sorghum	cytosol, peroxisome, plastid	24.83	23.53
OQU82118	Sorghum	cytosol	18.62	23.28
OQU81371	Sorghum	mitochondrion	19.77	22.81
OQU91835	Sorghum	cytosol, nucleus, plastid	20.92	20.5
KXG27134	Sorghum	cytosol	12.18	19.7
KXG40080	Sorghum	cytosol	19.31	19.63
KXG30756	Sorghum	cytosol	18.16	18.59
OQU83795	Sorghum	cytosol	18.62	18.16
OQU82347	Sorghum	mitochondrion	19.08	17.58

Protein Annotations

Gene3D:2.120.10.80	MapMan:9.2.1.1.3	UniProt:A0A194YNE2	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	EnsemblPlants:KXG29748	ProteinID:KXG29748
ProteinID:KXG29748.1	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24412
PANTHER:PTHR24412:SF234	SMART:SM00612	EnsemblPlantsGene:SORBI_3004G085500	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0007F246E5
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:7102150..7104993

Molecular Weight (calculated)

47064.4 Da

IEP (calculated)

10.003

GRAVY (calculated)

-0.225

Length

435 amino acids

Sequence
(BLAST)

001: MDTRNRAPPL VDSSACFCRV DRSSATAAAA AAARRIPVSK ACVQPSLRAS IHPLKPRPAA GADRSSRGGQ CPLLPGLPDD LAIACLIRVP RADHWKLRLV
101: CRRWCRLLAG NYFYGLRRRL GLAEQWLYAV KRDGGRDGHG GRVSWDVLDP SRGAWRALPP VPREYAEADG FGCAVLGGCH LYLLGGTDPR RGGGGAMRRV
201: VFYSARSNRW HRAPDMLRRR QCFDVCVMGN RLYVAGGESG SGGGLRSAEV FDPVKNRWSF VAEMAAPMAP FVSAVHGGRW YVKGIGAQQQ VLSQAYSPEA
301: DAWSVVLDGM VTGWRSPSAC VDGRLYAADC KDGCRLRAYD EAADAWTTCV DSKQHRGSSQ AAEAAAIVAL HGRLCIVRDD MSVSAVDVAP GAGNQRWQTL
401: AGKAHTKSFV TGLLANLAGR RRAKNNILHC QVLEA

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.