CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	95.43	95.22
TraesCS4D01G282200.1	Wheat	cytosol	77.63	81.53
Os03t0167800-02	Rice	cytosol	80.59	80.59
TraesCS4A01G020200.1	Wheat	cytosol	78.08	79.53
TraesCS4B01G283400.1	Wheat	cytosol	77.85	79.3
TraesCS4B01G283500.1	Wheat	cytosol	76.94	78.19
HORVU4Hr1G074720.7	Barley	plasma membrane	78.08	77.9
TraesCS3D01G540000.1	Wheat	cytosol	75.8	77.75
TraesCS3B01G611700.1	Wheat	cytosol	75.8	77.75
EER91632	Sorghum	plastid	76.94	77.12
TraesCS3A01G534600.1	Wheat	cytosol	74.66	75.87
GSMUA_Achr3P29560_001	Banana	cytosol	65.07	69.34
GSMUA_Achr7P27010_001	Banana	cytosol	65.75	69.23
HORVU3Hr1G116690.2	Barley	mitochondrion	76.26	68.58
Solyc01g022740.2.1	Tomato	cytosol	67.35	67.51
Solyc01g005970.2.1	Tomato	cytosol	67.35	67.51
PGSC0003DMT400034149	Potato	cytosol	67.35	67.51
VIT_06s0004g00860.t01	Wine grape	cytosol	67.35	67.51
PGSC0003DMT400081852	Potato	cytosol	67.12	67.28
KRH42810	Soybean	cytosol	65.98	66.13
KRH58897	Soybean	cytosol	65.75	65.9
CDY08233	Canola	mitochondrion	65.07	65.52
AT1G55270.1	Thale cress	mitochondrion	64.84	65.44
Bra011908.1-P	Field mustard	mitochondrion	64.61	65.06
CDY26117	Canola	cytosol	64.61	65.06
CDY02451	Canola	cytosol	64.16	64.6
CDY10574	Canola	cytosol	64.16	64.6
Bra030872.1-P	Field mustard	cytosol	63.93	64.37
CDY33062	Canola	mitochondrion, plastid	60.96	61.38
CDY24045	Canola	mitochondrion	60.73	61.15
Bra037989.1-P	Field mustard	cytosol, plastid	59.82	60.23
KRH11716	Soybean	cytosol, golgi, plastid	47.95	56.45
KRH36711	Soybean	cytosol	46.8	50.87
KXG29748	Sorghum	plastid	47.03	47.36
GSMUA_Achr4P03630_001	Banana	plasma membrane	60.05	30.98
EES06149	Sorghum	cytosol	20.55	26.01
EER97991	Sorghum	mitochondrion	24.2	25.6
EES06854	Sorghum	cytosol	21.69	24.8
OQU81371	Sorghum	mitochondrion	21.23	24.67
KXG24326	Sorghum	cytosol	25.8	24.15
EES05304	Sorghum	cytosol, peroxisome, plastid	23.97	22.88
OQU82118	Sorghum	cytosol	16.89	21.26
EER90147	Sorghum	cytosol	18.95	21.12
OQU91835	Sorghum	cytosol, nucleus, plastid	20.78	20.5
KXG27134	Sorghum	cytosol	12.56	20.45
KXG40080	Sorghum	cytosol	19.63	20.09
KXG30756	Sorghum	cytosol	18.95	19.53
OQU83795	Sorghum	cytosol	19.18	18.83
OQU82347	Sorghum	mitochondrion	19.63	18.22

Protein Annotations

Gene3D:2.120.10.80	EntrezGene:8059831	MapMan:9.2.1.1.3	UniProt:C5WWU3	EnsemblPlants:EER95442	ProteinID:EER95442
ProteinID:EER95442.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031463
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF01344	PANTHER:PTHR24412	PANTHER:PTHR24412:SF234
SMART:SM00612	EnsemblPlantsGene:SORBI_3001G492200	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0001A82F71	RefSeq:XP_002468444.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:76169107..76173616

Molecular Weight (calculated)

49551.2 Da

IEP (calculated)

10.430

GRAVY (calculated)

-0.314

Length

438 amino acids

Sequence
(BLAST)

001: MRAAAGGAPQ RRAGGIRVRA PLVESVSCYC RVDGGLKTVV SARKFVPGAK LCMQPDIIPT KRKSRSSRKE RSQTQSPLLP GLPDELAISC LMRAARVEHP
101: NMRLVCKRWN RLLSGNYYYS LRKKFGMAEE WIYVFKRDRD QKLSWYAFDP VNQLWKSLPP VPPEYSEAVG FGSAVLNGCY LYLFGGKDPV HGSMRRVVFY
201: NARINKWLRA PDMLQKRHFF GSCVINNCLY VAGGECVGIQ RSLRSAEVYD PNRNRWSSIA EMSTGMVPSI GVVHDGKWFL KGLNSHRQVV SEVYLPASKM
301: WSTTGNEMVT GLRNPSISLN GRLYSADCRD GCKLRVYNRE LGSWTRFIDT RHHMGSSRSL EAAAFVSLNG KLCIIRNNMS ITIIDMSDPT RVTEVDSARM
401: WEAFARKGQH RSFMANLWSA ITGRNLKTDI MHCQVLQV

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.