Factsheet for Bra011908.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26117	Canola	cytosol	99.54	99.54
CDY08233	Canola	mitochondrion	99.54	99.54
Bra030872.1-P	Field mustard	cytosol	97.47	97.47
AT1G55270.1	Thale cress	mitochondrion	95.63	95.85
Bra037989.1-P	Field mustard	cytosol, plastid	88.51	88.51
VIT_06s0004g00860.t01	Wine grape	cytosol	80.69	80.32
Solyc01g005970.2.1	Tomato	cytosol	79.77	79.41
PGSC0003DMT400081852	Potato	cytosol	79.08	78.72
PGSC0003DMT400034149	Potato	cytosol	77.47	77.12
Solyc01g022740.2.1	Tomato	cytosol	76.78	76.43
KRH42810	Soybean	cytosol	76.78	76.43
KRH58897	Soybean	cytosol	76.55	76.2
GSMUA_Achr3P29560_001	Banana	cytosol	68.74	72.75
GSMUA_Achr7P27010_001	Banana	cytosol	69.43	72.6
Zm00001d032991_P001	Maize	cytosol	70.57	70.25
EER91632	Sorghum	plastid	69.66	69.34
Os10t0409900-01	Rice	plastid	70.34	69.23
Os03t0167800-02	Rice	cytosol	69.66	69.18
TraesCS1B01G154600.1	Wheat	plastid	68.97	68.49
TraesCS4D01G282200.1	Wheat	cytosol	64.37	67.15
TraesCS3D01G540000.1	Wheat	cytosol	65.75	66.98
TraesCS3B01G611700.1	Wheat	cytosol	65.52	66.74
TraesCS4A01G020200.1	Wheat	cytosol	65.98	66.74
TraesCS4B01G283400.1	Wheat	cytosol	65.29	66.05
TraesCS3A01G534600.1	Wheat	cytosol	64.83	65.43
TraesCS4B01G283500.1	Wheat	cytosol	64.37	64.97
HORVU4Hr1G074720.7	Barley	plasma membrane	65.52	64.92
EER95442	Sorghum	mitochondrion	65.06	64.61
KRH11716	Soybean	cytosol, golgi, plastid	54.94	64.25
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	64.6	64.01
TraesCS1D01G136700.1	Wheat	nucleus	68.51	63.81
HORVU1Hr1G035200.1	Barley	plasma membrane	68.28	62.53
HORVU3Hr1G116690.2	Barley	mitochondrion	65.29	58.32
KRH36711	Soybean	cytosol	53.33	57.57
GSMUA_Achr4P03630_001	Banana	plasma membrane	61.38	31.45
Bra032358.1-P	Field mustard	mitochondrion, plastid	24.6	26.88
Bra033998.1-P	Field mustard	cytosol	22.07	26.52
Bra004227.1-P	Field mustard	cytosol	22.07	25.74
Bra010942.1-P	Field mustard	plastid	20.0	25.22
Bra031360.1-P	Field mustard	plastid	12.87	22.95
Bra007843.1-P	Field mustard	cytosol	19.54	22.85
Bra037535.1-P	Field mustard	cytosol	18.16	22.77
Bra026073.1-P	Field mustard	cytosol	10.8	22.71
Bra012304.1-P	Field mustard	cytosol	24.37	22.7
Bra005497.1-P	Field mustard	cytosol	7.36	22.22
Bra003447.1-P	Field mustard	cytosol	18.16	22.01
Bra001739.1-P	Field mustard	cytosol	17.24	21.68
Bra002471.1-P	Field mustard	cytosol	18.62	21.6
Bra032983.1-P	Field mustard	cytosol	19.54	20.68
Bra030046.1-P	Field mustard	cytosol, plastid	16.78	20.68
Bra025251.1-P	Field mustard	cytosol	19.31	19.4
Bra008155.1-P	Field mustard	cytosol	13.1	19.19
Bra010784.1-P	Field mustard	cytosol	17.47	19.14
Bra016297.1-P	Field mustard	cytosol	18.62	19.01
Bra017407.1-P	Field mustard	nucleus, plastid	18.62	18.45
Bra026575.1-P	Field mustard	nucleus	18.62	18.24
Bra026838.1-P	Field mustard	nucleus	17.01	18.18
Bra024801.1-P	Field mustard	nucleus	18.85	18.1
Bra030045.1-P	Field mustard	cytosol	19.31	17.83
Bra032052.1-P	Field mustard	cytosol	7.13	17.61
Bra034944.1-P	Field mustard	cytosol	16.32	17.36
Bra003796.1-P	Field mustard	cytosol	16.55	16.86
Bra015905.1-P	Field mustard	cytosol	15.4	16.26

Protein Annotations

Gene3D:2.120.10.80	MapMan:9.2.1.1.3	EnsemblPlantsGene:Bra011908	EnsemblPlants:Bra011908.1	EnsemblPlants:Bra011908.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4D600	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24412
PANTHER:PTHR24412:SF234	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002541348	SEG:seg

Description

AT1G55270 (E=4e-244) | kelch repeat-containing F-box family protein

Coordinates

chrA07:+:11423374..11424847

Molecular Weight (calculated)

49332.5 Da

IEP (calculated)

10.105

GRAVY (calculated)

-0.423

Length

435 amino acids

Sequence
(BLAST)

001: MDLSSHRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRSKNSKR ERTRIQPPLL PGLPDDLAVA CLIRVPRAEH
101: RKLRLVCKRW YRLASGNFFY SQRKLLGMSE EWVYVFKRDR DGKISWNTFD PVSQHPQPLP PVPREYSEAV GFGCAVLSGC HLYLFGGKDP LRGSMRRVIF
201: YNARTNKWHR APDMLRKRHF FGSCVINNCL YVAGGECEGI QRTLRSAEVY DPNKNRWSFV ADMSTAMVPL IGVVYDKKWF LKGLGSHQQV MSEAYDPETN
301: SWRPVSDGMV TGWRNPCTSL NGRLYGLDCR DGCKLRVFDE TTDSWNKFMD SKVHLGNSRA LEAAALVPLN NKLCIIRNNM SMSLVDVTNP DKNNPRVWEN
401: IAVKGQSKSI LSNIWSSIAG RAVKSHIVHC QVLQA

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.