Factsheet for Bra030046.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15707	Canola	cytosol, plastid	100.0	100.0
AT1G27420.1	Thale cress	cytosol, plastid	54.11	55.2
Bra010942.1-P	Field mustard	plastid	53.26	54.49
Bra030045.1-P	Field mustard	cytosol	56.94	42.68
Bra033998.1-P	Field mustard	cytosol	31.44	30.66
Bra004227.1-P	Field mustard	cytosol	31.16	29.49
Bra026073.1-P	Field mustard	cytosol	11.9	20.29
Bra032358.1-P	Field mustard	mitochondrion, plastid	19.83	17.59
Bra037989.1-P	Field mustard	cytosol, plastid	20.96	17.01
Bra011908.1-P	Field mustard	mitochondrion	20.68	16.78
Bra005497.1-P	Field mustard	cytosol	6.8	16.67
Bra030872.1-P	Field mustard	cytosol	20.4	16.55
Bra001739.1-P	Field mustard	cytosol	15.3	15.61
Bra037535.1-P	Field mustard	cytosol	14.73	14.99
Bra002471.1-P	Field mustard	cytosol	15.3	14.4
Bra007843.1-P	Field mustard	cytosol	15.01	14.25
Bra031360.1-P	Field mustard	plastid	9.63	13.93
Bra016297.1-P	Field mustard	cytosol	15.86	13.15
Bra003447.1-P	Field mustard	cytosol	13.31	13.09
Bra012304.1-P	Field mustard	cytosol	17.28	13.06
Bra032983.1-P	Field mustard	cytosol	14.73	12.65
Bra008155.1-P	Field mustard	cytosol	10.2	12.12
Bra025251.1-P	Field mustard	cytosol	14.73	12.01
Bra026838.1-P	Field mustard	nucleus	13.03	11.3
Bra026575.1-P	Field mustard	nucleus	14.16	11.26
Bra015905.1-P	Field mustard	cytosol	13.03	11.16
Bra017407.1-P	Field mustard	nucleus, plastid	13.88	11.16
Bra024801.1-P	Field mustard	nucleus	14.16	11.04
Bra003796.1-P	Field mustard	cytosol	13.31	11.01
Bra034944.1-P	Field mustard	cytosol	12.18	10.51
Bra010784.1-P	Field mustard	cytosol	11.33	10.08
Bra032052.1-P	Field mustard	cytosol	3.4	6.82

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra030046	EnsemblPlants:Bra030046.1	EnsemblPlants:Bra030046.1-P	InterPro:F-box-like_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:Kelch_2	UniProt:M4EMM6	PFAM:PF01344
PFAM:PF07646	PANTHER:PTHR24412	PANTHER:PTHR24412:SF377	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
TMHMM:TMhelix	UniParc:UPI00025411AF	SEG:seg	:	:	:

Description

AT1G27420 (E=2e-079) | kelch repeat-containing F-box family protein

Coordinates

chrA07:-:6980228..6981818

Molecular Weight (calculated)

40037.4 Da

IEP (calculated)

6.480

GRAVY (calculated)

0.098

Length

353 amino acids

Sequence
(BLAST)

001: MEESSTSIIP GLTDDVAALC LSRIPRSNFR VLSQVCRRWK TFLRSEHFAA VRKLTGTMEE FMCVFMKSIR GRKVYWEVFD SSGNNLGQIP PFPGPLKRGF
101: CVAVIGGEKI LFIGGYTGMK YWDFSRIPPI ASGDINEFSL STKSWRKLAD MNIPRYDFSL AEVDGLLYVV QGFSNDGYCL FNTEVYNPQT NQWSLMDGPV
201: AFPIGGFAFS FKSKLYAVVF DPEENSWTDE FLPTVEGGYR SGLGQWNNKV LLFSRLSVRE TLINGFDKEE GFKWRDCDQI KPSGSYLIVN TRSHQLLISF
301: SGSIILPIVC VCVWVTFWGC ESLCVWPQCP STLSMIFIWL VCNELLNLCV CVF

Best Arabidopsis Sequence Match ( AT1G27420.1 )
(BLAST)

001: MVVESSSSPI IPGLTDDVAE LCVSKIPRSS FQITSQVCRR WRSFLRSQHF AAVRKLTGTV EEFLCVLMES ECGRDVYWEV FDASGNKLGQ IPPVPGPLKR
101: GFGVAVLDGG KIVFFGGYTE VEGSGINSTT VSASADVYEF DPANNSWRKL AGMNIPRYNF AFAEVNGLLY VIRGYSTDTY SLSNAEVYNP KTNQWSLMHC
201: PNRPVWRGFA FAFSSKLYAV GNGSRFIDIY DPKTQTWEEL NSEQSVSVYS YTVVRNKVYF MDRNMPGRLG VFDPEENSWS SVFVPPREGG FWVRLGVWNN
301: KVLLFSRVCG HETLMYDLDK EKGSKWRVCD QIKPSASQLA SVLINF

Arabidopsis Description

Putative F-box/kelch-repeat protein At1g27420 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZJ3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.