Factsheet for Bra005497.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17172	Canola	cytosol	100.0	100.0
Bra026073.1-P	Field mustard	cytosol	77.08	53.62
Solyc07g042960.1.1	Tomato	cytosol, mitochondrion	38.19	31.25
AT1G16250.2	Thale cress	cytosol	66.67	25.07
GSMUA_Achr2P18470_001	Banana	cytosol	45.83	15.49
Bra031360.1-P	Field mustard	plastid	16.67	9.84
Bra037535.1-P	Field mustard	cytosol	22.22	9.22
Bra001739.1-P	Field mustard	cytosol	21.53	8.96
Bra033998.1-P	Field mustard	cytosol	22.22	8.84
Bra032358.1-P	Field mustard	mitochondrion, plastid	22.92	8.29
Bra007843.1-P	Field mustard	cytosol	20.83	8.06
Bra004227.1-P	Field mustard	cytosol	20.83	8.04
Bra037989.1-P	Field mustard	cytosol, plastid	22.92	7.59
Bra011908.1-P	Field mustard	mitochondrion	22.22	7.36
Bra030872.1-P	Field mustard	cytosol	21.53	7.13
Bra030046.1-P	Field mustard	cytosol, plastid	16.67	6.8
Bra002471.1-P	Field mustard	cytosol	17.36	6.67
Bra016297.1-P	Field mustard	cytosol	19.44	6.57
Bra012304.1-P	Field mustard	cytosol	20.83	6.42
Bra010942.1-P	Field mustard	plastid	15.28	6.38
Bra003447.1-P	Field mustard	cytosol	15.28	6.13
Bra024801.1-P	Field mustard	nucleus	17.36	5.52
Bra026838.1-P	Field mustard	nucleus	15.28	5.41
Bra026575.1-P	Field mustard	nucleus	16.67	5.41
Bra015905.1-P	Field mustard	cytosol	15.28	5.34
Bra017407.1-P	Field mustard	nucleus, plastid	15.28	5.01
Bra003796.1-P	Field mustard	cytosol	14.58	4.92
Bra010784.1-P	Field mustard	cytosol	13.19	4.79
Bra034944.1-P	Field mustard	cytosol	12.5	4.4
Bra008155.1-P	Field mustard	cytosol	9.03	4.38
Bra025251.1-P	Field mustard	cytosol	12.5	4.16
Bra030045.1-P	Field mustard	cytosol	13.19	4.03
Bra032983.1-P	Field mustard	cytosol	9.72	3.41
Bra032052.1-P	Field mustard	cytosol	0.0	0.0
Solyc07g042950.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Bra005497.1	EnsemblPlants:Bra005497.1-P	EnsemblPlantsGene:Bra005497	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR24414	PANTHER:PTHR24414:SF41
PFAM:PF00646	SUPFAM:SSF81383	UniParc:UPI00025473FC	UniProt:M4CMQ9	MapMan:35.1	:

Description

AT1G16250 (E=2e-054) | kelch repeat-containing F-box family protein

Coordinates

chrA05:+:5815234..5815840

Molecular Weight (calculated)

16565.6 Da

IEP (calculated)

6.491

GRAVY (calculated)

-0.278

Length

144 amino acids

Sequence
(BLAST)

001: MRRVPNGLPV KTTFVQLMET KEQSIISGLP DDLALRCIAK LSHGYHGTLE CVSKDWRDLV RSEVYSCYKA RNGWSGNWLF AHSNNQWVAY DSDADRWHPL
101: PRNEAIQDCW DHSGFACVCV SSCLLMIKDC YVSSFPYEEH VVVY

Best Arabidopsis Sequence Match ( AT1G16250.2 )
(BLAST)

001: MESIEQSIIP GLPDDLALRC IAKLSHGYHG VLECVSRGWR DLVRGADYSC YKARNGWSGS WLFVLTERSK NQWVAYDPEA DRWHPLPRTR AVQDGWHHSG
101: FACVCVSNCL LVIGGCYAPS VSSFPHQKPV VTKDVMRFDP FKKQWKMVAS MRTPRTHFAC TSVSGKVYVA GGRNLTHSRG IPSAEVYDPV ADRWEELPAM
201: PRPQMDCSGL SYRGCFHVLS DQVGFAEQNS SEVFNPRDMT WSTVEDVWPF SRAMQFAVQV MKNDRVYTIV DWGESLIKTR DTDEGEWYNV GSVPSVVLPN
301: HPRELEAFGY GFAALRNELY VIGGKVLKWE ESGAGRFDIV RLPVVRVCNP LDRPLNWRET KPMCIPAGGS IIGCVSLEES SPP

Arabidopsis Description

F-box/kelch-repeat protein At1g16250 [Source:UniProtKB/Swiss-Prot;Acc:Q0WW40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.