Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 3
  • cytosol 1
  • nucleus 3
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, plastid
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G02870.1 Bra003735.1-P AT1G75950.1 12795696
AT2G02870.1 Bra008231.1-P AT1G75950.1 12795696
AT2G02870.1 Bra015801.1-P AT1G75950.1 12795696
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY09349 Canola nucleus 99.32 99.32
CDY62176 Canola nucleus 97.97 97.32
Bra017407.1-P Field mustard nucleus, plastid 84.91 85.88
Bra024801.1-P Field mustard nucleus 87.39 85.65
AT2G02870.1 Thale cress nucleus 88.96 84.58
Bra026838.1-P Field mustard nucleus 69.37 75.68
Solyc04g005670.1.1 Tomato cytosol 58.11 63.86
TraesCS4D01G286700.1 Wheat cytosol 47.3 63.64
PGSC0003DMT400007346 Potato nucleus 61.26 62.82
Bra016297.1-P Field mustard cytosol 59.91 62.44
TraesCS4A01G493800.1 Wheat cytosol 34.23 60.56
Solyc04g005870.1.1 Tomato cytosol 7.21 60.38
GSMUA_Achr4P09990_001 Banana cytosol 55.86 57.81
PGSC0003DMT400059324 Potato cytosol 62.16 57.5
Zm00001d052253_P001 Maize cytosol 54.5 57.21
TraesCS6D01G285100.1 Wheat cytosol, nucleus, plastid 54.73 57.18
TraesCS6A01G306000.1 Wheat cytosol 54.5 56.94
TraesCS6B01G334300.1 Wheat cytosol, nucleus, plastid 54.5 56.94
GSMUA_Achr8P01380_001 Banana cytosol 48.65 56.84
HORVU6Hr1G075590.1 Barley cytosol, nucleus, plastid 54.28 56.71
KXG30756 Sorghum cytosol 53.83 56.24
GSMUA_Achr7P20970_001 Banana cytosol 50.0 56.2
Os02t0748300-01 Rice cytosol 53.15 55.4
TraesCS4A01G016200.1 Wheat cytosol 53.6 55.22
GSMUA_Achr1P21630_001 Banana cytosol 46.85 55.17
KXG40080 Sorghum cytosol 53.15 55.14
TraesCS7A01G004600.1 Wheat cytosol 45.05 54.95
Zm00001d027856_P001 Maize cytosol 52.93 54.78
GSMUA_Achr4P00520_001 Banana cytosol 47.97 54.76
Zm00001d048310_P001 Maize cytosol 52.7 54.67
Os03t0171600-01 Rice cytosol 52.7 54.29
Bra008155.1-P Field mustard cytosol 36.04 53.87
HORVU4Hr1G075310.1 Barley cytosol 53.15 53.76
Zm00001d014203_P001 Maize cytosol, nucleus, plastid 52.93 53.05
Bra015905.1-P Field mustard cytosol 49.1 52.91
OQU91835 Sorghum cytosol, nucleus, plastid 52.7 52.7
KRH45883 Soybean cytosol 63.74 52.5
TraesCS7D01G007100.1 Wheat cytosol 43.92 52.42
Bra003796.1-P Field mustard cytosol 50.23 52.22
VIT_01s0026g02080.t01 Wine grape nucleus 63.51 52.13
KRH74828 Soybean cytosol 62.61 51.77
KRG99114 Soybean cytosol 62.84 51.76
TraesCS7D01G005100.1 Wheat cytosol 25.0 51.63
KRH70694 Soybean cytosol 62.39 51.39
Zm00001d033012_P001 Maize cytosol 51.58 51.35
GSMUA_Achr8P17960_001 Banana nucleus 47.75 50.96
GSMUA_Achr10P... Banana nucleus 48.87 49.89
PGSC0003DMT400091785 Potato cytosol, mitochondrion, plastid 17.57 49.37
TraesCS4A01G487800.1 Wheat cytosol 27.93 48.06
Os11t0602800-01 Rice nucleus 46.62 47.92
Zm00001d048898_P001 Maize cytosol 45.95 46.9
GSMUA_Achr2P14920_001 Banana mitochondrion 50.45 46.86
HORVU2Hr1G057140.1 Barley cytosol 19.59 46.77
HORVU2Hr1G057150.1 Barley cytosol 19.59 46.77
TraesCS4A01G492300.1 Wheat cytosol, golgi, plastid 40.09 46.23
Zm00001d007596_P001 Maize nucleus, plastid 45.27 45.58
OQU83795 Sorghum cytosol 45.5 45.29
TraesCS4A01G489600.1 Wheat cytosol 38.51 45.24
TraesCS4A01G489300.1 Wheat cytosol 38.74 45.14
GSMUA_Achr3P01570_001 Banana golgi 48.65 44.17
Bra002471.1-P Field mustard cytosol 35.81 42.4
GSMUA_Achr4P24130_001 Banana nucleus 49.1 42.17
Solyc05g007220.2.1 Tomato nucleus 59.01 40.68
HORVU7Hr1G000010.5 Barley cytosol 39.86 40.41
PGSC0003DMT400007391 Potato cytosol 12.16 40.3
Bra032052.1-P Field mustard cytosol 14.64 36.93
HORVU7Hr1G000070.1 Barley cytosol 40.99 34.67
TraesCS4A01G491100.1 Wheat cytosol 39.64 33.46
Bra032983.1-P Field mustard cytosol 29.95 32.36
TraesCS4A01G493200.1 Wheat cytosol, plasma membrane 33.78 31.65
Bra025251.1-P Field mustard cytosol 30.41 31.18
Bra010784.1-P Field mustard cytosol 25.9 28.97
Bra034944.1-P Field mustard cytosol 26.58 28.85
Bra033998.1-P Field mustard cytosol 16.67 20.44
Bra004227.1-P Field mustard cytosol 17.12 20.38
Bra037535.1-P Field mustard cytosol 15.32 19.6
Bra026073.1-P Field mustard cytosol 9.01 19.32
Bra031360.1-P Field mustard plastid 10.59 19.26
Bra010942.1-P Field mustard plastid 14.86 19.13
Bra001739.1-P Field mustard cytosol 14.86 19.08
Bra003447.1-P Field mustard cytosol 15.09 18.66
Bra012304.1-P Field mustard cytosol 19.59 18.63
Bra011908.1-P Field mustard mitochondrion 18.24 18.62
Bra030872.1-P Field mustard cytosol 18.02 18.39
Bra032358.1-P Field mustard mitochondrion, plastid 16.44 18.34
Bra037989.1-P Field mustard cytosol, plastid 17.57 17.93
Bra007843.1-P Field mustard cytosol 14.41 17.2
Bra005497.1-P Field mustard cytosol 5.41 16.67
Bra030046.1-P Field mustard cytosol, plastid 11.26 14.16
Bra030045.1-P Field mustard cytosol 14.64 13.8
Protein Annotations
EnsemblPlants:Bra026575.1EnsemblPlants:Bra026575.1-PEnsemblPlantsGene:Bra026575Gene3D:2.120.10.80GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:IPR015915InterPro:Kelch-typ_b-propellerInterPro:Kelch_1PANTHER:PTHR24413PANTHER:PTHR24413:SF138
PFAM:PF01344SEG:segSMART:SM00612SUPFAM:SSF117281UniParc:UPI00025466EBUniProt:M4ECR5
MapMan:35.1:::::
Description
AT2G02870 (E=6e-196) | kelch repeat-containing F-box family protein
Coordinates
chrA02:-:20359879..20361213
Molecular Weight (calculated)
49271.9 Da
IEP (calculated)
6.013
GRAVY (calculated)
-0.416
Length
444 amino acids
Sequence
(BLAST)
001: MLEERSPDSC LSSRLFSTSR ISESSWSNSF MFPDHDDKLS NGKRALEVAS EIRPTKSLKL MGFSIQYDSD SSDYSGTSQE SDSNNNGGDS TDSHSLFNEI
101: GRDNSIDCLI RCSRSDYGSI ASLSRNFRSL VKSGEIYRLR RQNGFVEHWV YFSCQPLEWV AFDPVERRWM QLPTMPSSVT FMGADKESLA VGTDLLVLGQ
201: AGFSSYVIYR YSLLTNSWSS GMEMNSPRCL FGSASLGEIA IFAGGIDSQR KILDSAEMYN SELQTWTTLP RMNKPRKMCS GVFMDGKFYV IGGIGGADSK
301: LLTCGEEYDL DTKKWTHIPD LSPPRSRADV SSANDAPPLV AVVNNQLYAA DHADMEVRKY DKEKKRWLTV GRLPERAGSV NGWGLAFRAC GERLIVIGGP
401: RNSGGGFIEL NSWIPSDGGG PPQWTLLDRK HSPNFVYNCA VMGC
Best Arabidopsis Sequence Match ( AT2G02870.2 )
(BLAST)
001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC
Arabidopsis Description
SKIP11F-box/kelch-repeat protein SKIP11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L736]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.