Factsheet for TraesCS6A01G306000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G285100.1	Wheat	cytosol, nucleus, plastid	99.06	99.06
TraesCS6B01G334300.1	Wheat	cytosol, nucleus, plastid	98.82	98.82
HORVU6Hr1G075590.1	Barley	cytosol, nucleus, plastid	97.65	97.65
Os02t0748300-01	Rice	cytosol	88.0	87.79
KXG30756	Sorghum	cytosol	87.29	87.29
Zm00001d052253_P001	Maize	cytosol	86.82	87.23
GSMUA_Achr4P00520_001	Banana	cytosol	62.12	67.87
GSMUA_Achr7P20970_001	Banana	cytosol	63.06	67.85
GSMUA_Achr4P09990_001	Banana	cytosol	68.24	67.6
TraesCS4A01G493800.1	Wheat	cytosol	38.12	64.54
VIT_17s0000g05920.t01	Wine grape	cytosol	64.0	61.4
Solyc04g005670.1.1	Tomato	cytosol	57.18	60.15
TraesCS4A01G016200.1	Wheat	cytosol	60.94	60.09
PGSC0003DMT400007346	Potato	nucleus	60.47	59.35
CDY33755	Canola	cytosol	17.18	59.35
TraesCS7A01G004600.1	Wheat	cytosol	50.35	58.79
KRH54527	Soybean	cytosol	59.53	57.37
Bra026838.1-P	Field mustard	nucleus	54.35	56.76
CDX81631	Canola	nucleus	54.35	56.48
KRH63378	Soybean	cytosol	58.59	56.46
CDY62015	Canola	nucleus	54.82	56.14
CDY60836	Canola	cytosol	49.88	55.79
AT1G14330.1	Thale cress	nucleus	57.88	55.78
Solyc03g113010.1.1	Tomato	cytosol	57.41	55.33
CDY49094	Canola	nucleus	54.59	54.72
Bra017407.1-P	Field mustard	nucleus, plastid	56.47	54.67
CDY17425	Canola	cytosol	51.53	54.61
Bra026575.1-P	Field mustard	nucleus	56.94	54.5
CDY09349	Canola	nucleus	56.71	54.28
CDY62176	Canola	nucleus	56.94	54.14
CDY03028	Canola	cytosol	56.94	53.9
TraesCS4A01G487800.1	Wheat	cytosol	32.71	53.88
PGSC0003DMT400046591	Potato	extracellular	57.65	53.73
CDY45190	Canola	nucleus	56.94	53.42
Bra024801.1-P	Field mustard	nucleus	56.71	53.2
KRH03453	Soybean	cytosol	50.82	52.94
AT2G02870.1	Thale cress	nucleus	57.88	52.68
AT1G26930.1	Thale cress	cytosol	51.53	52.02
CDY46430	Canola	cytosol	51.76	51.64
CDY52764	Canola	cytosol	51.53	51.53
Bra016297.1-P	Field mustard	cytosol	51.53	51.41
Solyc04g005870.1.1	Tomato	cytosol	6.35	50.94
CDY33754	Canola	nucleus	29.88	50.8
TraesCS4A01G492300.1	Wheat	cytosol, golgi, plastid	45.41	50.13
CDY16205	Canola	nucleus	49.88	50.12
PGSC0003DMT400059324	Potato	cytosol	56.24	49.79
TraesCS4A01G489300.1	Wheat	cytosol	44.24	49.34
TraesCS4A01G489600.1	Wheat	cytosol	43.76	49.21
VIT_01s0026g02080.t01	Wine grape	nucleus	62.12	48.8
KRH56929	Soybean	cytosol	46.35	48.4
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	17.18	46.2
KRH45883	Soybean	cytosol	58.59	46.2
KRG99114	Soybean	cytosol	58.35	46.01
KRH70694	Soybean	cytosol	57.18	45.08
KRH74828	Soybean	cytosol	56.94	45.07
TraesCS2A01G462600.1	Wheat	cytosol	47.29	44.77
TraesCS4A01G491100.1	Wheat	cytosol	46.12	37.26
Solyc05g007220.2.1	Tomato	nucleus	55.76	36.8
PGSC0003DMT400007391	Potato	cytosol	11.29	35.82
TraesCS4A01G493200.1	Wheat	cytosol, plasma membrane	38.12	34.18
TraesCS3A01G534600.1	Wheat	cytosol	20.47	20.19
TraesCS3A01G446400.1	Wheat	cytosol, plastid	17.65	19.48
TraesCS6A01G175700.1	Wheat	plastid	19.29	19.39
TraesCS7A01G020100.1	Wheat	cytosol, plastid	20.24	18.86
TraesCS4A01G020200.1	Wheat	cytosol	19.06	18.84
TraesCS4A01G472100.1	Wheat	cytosol	20.24	18.78
TraesCS6A01G037900.1	Wheat	cytosol	16.0	18.73
TraesCS2A01G280900.1	Wheat	mitochondrion	16.71	18.54
TraesCS6A01G211500.1	Wheat	extracellular, golgi	12.94	17.86
TraesCS2A01G499700.1	Wheat	cytosol, mitochondrion	16.71	17.84
TraesCS7A01G496600.1	Wheat	cytosol	14.12	15.58
TraesCS5A01G544300.1	Wheat	extracellular, plasma membrane	10.12	15.04

Protein Annotations

EnsemblPlants:TraesCS6A01G306000.1	EnsemblPlantsGene:TraesCS6A01G306000	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF133	PFAM:PF01344
SMART:SM00612	SUPFAM:SSF117281	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr6A:+:539648734..539651291

Molecular Weight (calculated)

46922.1 Da

IEP (calculated)

6.363

GRAVY (calculated)

-0.225

Length

425 amino acids

Sequence
(BLAST)

001: MLEGQSCLIS RSLPSSCEQE SRLAYMTYHL LEITRTKRPS GVLAIEQDGI AVAAVLAKRP KSEDSHDAVP VDCQGGNQGY SDSSTLISSI GRDNSINCLA
101: RCSRSDYGSI ASLSRNFRSL VRDGGLYRER RRLGIAEHWV YFSCNVQEWE AYDPYRERWM TLPRMPPNEC FMCSDKESLA VGTELLVFGK EILSHIVLSY
201: SILTNSWSRG VEMNAPRCLF GSASFGEKAI IAGGMDCFGN VLSSAELYNS ETKSWITLPS MNKRRRMCSG VFMDGKFYVI GGMASNTEVL TCGEEYDLEK
301: GTWRLIENMS EGLNGASGAP PLVAVVDNEL YAAQYAGKLV RKYNKSDNTW TTLGELPERP EAVNGWGIAF RGCGERLLVI GGPRVLGGGM IELHSWIPRE
401: GPLQWNMIGS KPSGNFVYNC AVMGC

Best Arabidopsis Sequence Match ( AT1G74510.3 )
(BLAST)

001: MLEAPSYLVS RDLPSSCEEE SKWIYNAHCV LQLSLRKRLL DDTDVEGSSA KKMLRVDHGS RGESDKITDS LQLAKTYQSS NQSQQGGGGD QQSSPVTRLD
101: QNALLNCLAH CSLSDFGSIA STNRTFRSLI KDSELYRLRR AKGIVEHWIY FSCRLLEWEA YDPNGDRWLR VPKMTFNECF MCSDKESLAV GTELLVFGKE
201: IMSHVIYRYS ILTNTWTSGM QMNVPRCLFG SASLGEIAVI AGGCDPRGRI LSSAELYNSE TGEWTVIPSM NKARKMCSSV FMDGNFYCIG GIGEGNSKML
301: LCGEVYDLKK KTWTLIPNML PERSSGGGGD QAKEIAAATA ASEAPPLVAV VKDELYAANY AQQEVKKYDK RLNVWNKVGN LPERASSMNG WGMAFRACGD
401: QLVVVGGPRA IGGGFIEINA CVPSEGTQLH WRVLASKPSG NFVYNCAVMG C

Arabidopsis Description

F-box/kelch-repeat protein At1g74510 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA63]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.