Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024801.1-P | Field mustard | nucleus | 99.56 | 99.56 |
| CDY03028 | Canola | cytosol | 97.57 | 98.44 |
| CDY17425 | Canola | cytosol | 78.59 | 88.78 |
| AT2G02870.1 | Thale cress | nucleus | 90.07 | 87.37 |
| CDY09349 | Canola | nucleus | 85.21 | 86.94 |
| CDY62176 | Canola | nucleus | 85.21 | 86.35 |
| CDY60836 | Canola | cytosol | 72.41 | 86.32 |
| CDY33755 | Canola | cytosol | 22.3 | 82.11 |
| CDX81631 | Canola | nucleus | 70.2 | 77.75 |
| CDY62015 | Canola | nucleus | 71.08 | 77.59 |
| CDY49094 | Canola | nucleus | 71.3 | 76.18 |
| CDY33754 | Canola | nucleus | 39.74 | 72.0 |
| Solyc04g005870.1.1 | Tomato | cytosol | 7.51 | 64.15 |
| Solyc04g005670.1.1 | Tomato | cytosol | 56.73 | 63.61 |
| TraesCS4D01G286700.1 | Wheat | cytosol | 45.92 | 63.03 |
| PGSC0003DMT400007346 | Potato | nucleus | 59.82 | 62.59 |
| CDY46430 | Canola | cytosol | 57.84 | 61.5 |
| CDY52764 | Canola | cytosol | 57.62 | 61.41 |
| CDY16205 | Canola | nucleus | 56.95 | 60.99 |
| TraesCS4A01G493800.1 | Wheat | cytosol | 33.33 | 60.16 |
| GSMUA_Achr4P09990_001 | Banana | cytosol | 54.53 | 57.58 |
| TraesCS6D01G285100.1 | Wheat | cytosol, nucleus, plastid | 53.86 | 57.41 |
| PGSC0003DMT400059324 | Potato | cytosol | 60.49 | 57.08 |
| HORVU6Hr1G075590.1 | Barley | cytosol, nucleus, plastid | 53.42 | 56.94 |
| TraesCS6A01G306000.1 | Wheat | cytosol | 53.42 | 56.94 |
| TraesCS6B01G334300.1 | Wheat | cytosol, nucleus, plastid | 53.42 | 56.94 |
| GSMUA_Achr7P20970_001 | Banana | cytosol | 49.23 | 56.46 |
| Zm00001d052253_P001 | Maize | cytosol | 52.32 | 56.03 |
| Os02t0748300-01 | Rice | cytosol | 52.54 | 55.87 |
| KXG30756 | Sorghum | cytosol | 52.1 | 55.53 |
| GSMUA_Achr4P00520_001 | Banana | cytosol | 47.68 | 55.53 |
| GSMUA_Achr8P01380_001 | Banana | cytosol | 45.92 | 54.74 |
| TraesCS4A01G016200.1 | Wheat | cytosol | 51.88 | 54.52 |
| TraesCS7A01G004600.1 | Wheat | cytosol | 43.71 | 54.4 |
| GSMUA_Achr1P21630_001 | Banana | cytosol | 45.25 | 54.38 |
| Os03t0171600-01 | Rice | cytosol | 51.66 | 54.29 |
| KXG40080 | Sorghum | cytosol | 50.99 | 53.97 |
| HORVU4Hr1G075310.1 | Barley | cytosol | 51.88 | 53.53 |
| Zm00001d048310_P001 | Maize | cytosol | 50.55 | 53.5 |
| Zm00001d027856_P001 | Maize | cytosol | 50.33 | 53.15 |
| CDX73096 | Canola | cytosol | 46.8 | 52.87 |
| CDX68177 | Canola | cytosol | 48.57 | 52.76 |
| CDY70379 | Canola | cytosol | 18.32 | 52.53 |
| Zm00001d014203_P001 | Maize | cytosol, nucleus, plastid | 51.21 | 52.37 |
| KRH45883 | Soybean | cytosol | 62.03 | 52.13 |
| CDX96551 | Canola | cytosol | 46.58 | 51.97 |
| OQU91835 | Sorghum | cytosol, nucleus, plastid | 50.77 | 51.8 |
| CDX85842 | Canola | cytosol | 48.79 | 51.76 |
| VIT_01s0026g02080.t01 | Wine grape | nucleus | 61.81 | 51.76 |
| TraesCS7D01G007100.1 | Wheat | cytosol | 42.38 | 51.61 |
| KRH74828 | Soybean | cytosol | 61.15 | 51.58 |
| KRG99114 | Soybean | cytosol | 61.37 | 51.58 |
| KRH70694 | Soybean | cytosol | 60.93 | 51.21 |
| TraesCS7D01G005100.1 | Wheat | cytosol | 24.28 | 51.16 |
| Zm00001d033012_P001 | Maize | cytosol | 50.33 | 51.12 |
| GSMUA_Achr8P17960_001 | Banana | nucleus | 45.47 | 49.52 |
| GSMUA_Achr10P... | Banana | nucleus | 46.36 | 48.28 |
| PGSC0003DMT400091785 | Potato | cytosol, mitochondrion, plastid | 16.78 | 48.1 |
| TraesCS4A01G487800.1 | Wheat | cytosol | 27.15 | 47.67 |
| Os11t0602800-01 | Rice | nucleus | 45.25 | 47.45 |
| Zm00001d048898_P001 | Maize | cytosol | 44.59 | 46.44 |
| GSMUA_Achr2P14920_001 | Banana | mitochondrion | 48.34 | 45.82 |
| HORVU2Hr1G057140.1 | Barley | cytosol | 18.76 | 45.7 |
| HORVU2Hr1G057150.1 | Barley | cytosol | 18.76 | 45.7 |
| Zm00001d007596_P001 | Maize | nucleus, plastid | 44.37 | 45.58 |
| TraesCS4A01G492300.1 | Wheat | cytosol, golgi, plastid | 38.41 | 45.19 |
| OQU83795 | Sorghum | cytosol | 44.37 | 45.07 |
| TraesCS4A01G489300.1 | Wheat | cytosol | 37.53 | 44.62 |
| TraesCS4A01G489600.1 | Wheat | cytosol | 37.09 | 44.44 |
| GSMUA_Achr3P01570_001 | Banana | golgi | 45.7 | 42.33 |
| PGSC0003DMT400007391 | Potato | cytosol | 12.36 | 41.79 |
| GSMUA_Achr4P24130_001 | Banana | nucleus | 47.68 | 41.78 |
| CDY31534 | Canola | cytosol | 34.0 | 41.07 |
| CDX80156 | Canola | cytosol | 34.22 | 40.9 |
| Solyc05g007220.2.1 | Tomato | nucleus | 58.06 | 40.84 |
| HORVU7Hr1G000010.5 | Barley | cytosol | 37.97 | 39.27 |
| CDY66938 | Canola | cytosol, mitochondrion | 14.35 | 36.93 |
| CDY53460 | Canola | cytosol | 13.47 | 34.66 |
| CDX82682 | Canola | cytosol | 23.84 | 34.5 |
| HORVU7Hr1G000070.1 | Barley | cytosol | 39.96 | 34.48 |
| TraesCS4A01G491100.1 | Wheat | cytosol | 37.75 | 32.51 |
| CDY65956 | Canola | cytosol | 13.47 | 32.45 |
| CDY28493 | Canola | cytosol | 28.92 | 31.87 |
| CDY34175 | Canola | cytosol | 28.7 | 31.63 |
| CDY13683 | Canola | cytosol | 29.36 | 30.72 |
| TraesCS4A01G493200.1 | Wheat | cytosol, plasma membrane | 31.79 | 30.38 |
| CDY52395 | Canola | cytosol | 28.92 | 30.25 |
| CDY36146 | Canola | cytosol | 26.93 | 29.26 |
| CDY63005 | Canola | cytosol | 26.71 | 29.02 |
| CDY69929 | Canola | cytosol | 26.71 | 29.02 |
| CDY64780 | Canola | cytosol | 27.59 | 28.8 |
| CDX90239 | Canola | cytosol | 24.28 | 27.71 |
| CDY49979 | Canola | cytosol | 24.5 | 27.21 |
| CDY12345 | Canola | cytosol | 27.15 | 27.03 |
| CDY01301 | Canola | cytosol | 8.39 | 24.2 |
| CDY49977 | Canola | cytosol | 22.3 | 21.49 |
| CDY04697 | Canola | cytosol | 10.38 | 21.08 |
| CDY30645 | Canola | nucleus | 10.15 | 20.63 |
| CDY51562 | Canola | cytosol | 16.34 | 20.61 |
| CDY35074 | Canola | cytosol | 9.27 | 20.1 |
| CDY58793 | Canola | cytosol | 15.89 | 20.06 |
| CDY33348 | Canola | cytosol | 7.95 | 20.0 |
| CDY36145 | Canola | cytosol | 15.45 | 20.0 |
| CDY66857 | Canola | cytosol | 15.67 | 19.94 |
| CDY12647 | Canola | cytosol | 15.89 | 19.89 |
| CDX96091 | Canola | cytosol | 16.34 | 19.84 |
| CDX81755 | Canola | cytosol | 17.0 | 19.74 |
| CDY70128 | Canola | cytosol | 14.57 | 19.58 |
| CDY22982 | Canola | cytosol | 14.79 | 19.36 |
| CDY33062 | Canola | mitochondrion, plastid | 18.54 | 19.31 |
| CDY01812 | Canola | cytosol | 15.89 | 19.3 |
| CDX90085 | Canola | plastid | 14.57 | 19.13 |
| CDY11811 | Canola | plastid | 14.57 | 19.13 |
| CDY08233 | Canola | mitochondrion | 18.32 | 19.08 |
| CDY24045 | Canola | mitochondrion | 18.32 | 19.08 |
| CDX82306 | Canola | cytosol | 14.57 | 19.08 |
| CDY64382 | Canola | plastid | 14.35 | 19.01 |
| CDY18573 | Canola | cytosol | 14.57 | 18.97 |
| CDY02451 | Canola | cytosol | 18.1 | 18.85 |
| CDY10574 | Canola | cytosol | 18.1 | 18.85 |
| CDY26117 | Canola | cytosol | 18.1 | 18.85 |
| CDY58259 | Canola | cytosol | 14.35 | 18.73 |
| CDX99248 | Canola | cytosol | 14.35 | 18.68 |
| CDX96822 | Canola | extracellular, vacuole | 17.44 | 18.29 |
| CDY52247 | Canola | cytosol | 12.8 | 18.12 |
| CDY15708 | Canola | cytosol | 13.69 | 18.08 |
| CDY03923 | Canola | cytosol | 13.47 | 18.05 |
| CDY35075 | Canola | cytosol | 7.28 | 17.93 |
| CDY54825 | Canola | cytosol | 7.51 | 17.62 |
| CDX76807 | Canola | cytosol | 14.35 | 17.62 |
| CDX99882 | Canola | mitochondrion, plastid | 15.45 | 17.59 |
| CDY17172 | Canola | cytosol | 5.52 | 17.36 |
| CDY26295 | Canola | mitochondrion, plastid | 15.23 | 17.34 |
| CDY34765 | Canola | cytosol | 14.13 | 17.2 |
| CDY64883 | Canola | golgi, plastid | 15.45 | 17.03 |
| CDY00415 | Canola | mitochondrion | 7.51 | 15.89 |
| CDY01300 | Canola | cytosol | 7.73 | 15.62 |
| CDY15707 | Canola | cytosol, plastid | 11.04 | 14.16 |
| CDY03921 | Canola | cytosol, extracellular, plasma membrane | 9.49 | 12.18 |
Protein Annotations
| EnsemblPlants:CDY45190 | EnsemblPlantsGene:GSBRNA2T00081616001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF138 | PFAM:PF01344 |
| ProteinID:CDY45190 | ProteinID:CDY45190.1 | SEG:seg | SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI0004EDC720 |
| UniProt:A0A078I2U9 | MapMan:35.1 | : | : | : | : |
Description
BnaA06g33940DBnaA06g33940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2U9]
Coordinates
chrLK032617:-:125605..127813
Molecular Weight (calculated)
50351.2 Da
IEP (calculated)
5.237
GRAVY (calculated)
-0.475
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MLENRSPDSC LSSRLFSEST WSKSFMFPQD DDDNKLSNGN GNGKKRALEV VGEIRGTKSL KLMGFSITYD SDSSDYSEDG SIQEQEQGDS NTNGGDSSDS
101: HSLINEIGRD NSIDCLIRCS RSDYGSIASL SRNFRSLVKS GDIYKLRRQN GYVEHWVYFS CQLLEWVAFD PVERRWMQLP TMPSSVTFMC ADKESLAVGT
201: DLLVLGKDDF SSHVIYRYSL LTNSWSSGMK MNSPRCLFGS ASLGEIAIFA GGCDSQGKIL DFAEMYNSEL QTWVTLPRMN KPRKMCSGVF MDGKFYVIGG
301: IGGADAKALT CGEEYDLEAK KWTEVPDLSP PRSRADQADA RPAAEAPPLV AVVNNQLYAA DHADMEVRKY DKEKKKWWTI GRLPERAGSV NGWGLAFRAC
401: GERLIVIGGP KYSGGGFIEL NSWTPRDGDP PQWTLLDRKH SPNFVYNCAV MGC
101: HSLINEIGRD NSIDCLIRCS RSDYGSIASL SRNFRSLVKS GDIYKLRRQN GYVEHWVYFS CQLLEWVAFD PVERRWMQLP TMPSSVTFMC ADKESLAVGT
201: DLLVLGKDDF SSHVIYRYSL LTNSWSSGMK MNSPRCLFGS ASLGEIAIFA GGCDSQGKIL DFAEMYNSEL QTWVTLPRMN KPRKMCSGVF MDGKFYVIGG
301: IGGADAKALT CGEEYDLEAK KWTEVPDLSP PRSRADQADA RPAAEAPPLV AVVNNQLYAA DHADMEVRKY DKEKKKWWTI GRLPERAGSV NGWGLAFRAC
401: GERLIVIGGP KYSGGGFIEL NSWTPRDGDP PQWTLLDRKH SPNFVYNCAV MGC
001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC
Arabidopsis Description
SKIP11F-box/kelch-repeat protein SKIP11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L736]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.